Information for 2-CCGTGGTTTA (Motif 6)


Reverse Opposite:

p-value:1e0
log p-value:-2.254e+00
Information Content per bp:1.962
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets570.1 +/- 293.2bp
Average Position of motif in Background673.9 +/- 244.1bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCGTGGTTTA
NNTGTGGTTT-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCGTGGTTTA
GCTGTGGTTT-

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCGTGGTTTA
CTGTGGTTTN

MA0002.2_RUNX1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCGTGGTTTA
GTCTGTGGTTT-

MA0483.1_Gfi1b/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCGTGGTTTA
TGCTGTGATTT-

bin/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCGTGGTTTA
TCGTTGTTTA

MA0511.1_RUNX2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCGTGGTTTA
GGGGTTTGTGGTTTG

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCGTGGTTTA
NNHTGTGGTTWN

FKH1/FKH1_YPD/53-FKH1,53-FKH2(Harbison)/Yeast

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCGTGGTTTA-
---TTGTTTAC

MA0485.1_Hoxc9/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCGTGGTTTA-----
--NTGATTTATGGCC