Information for 3-CCTTGTGTTTTG (Motif 4)


Reverse Opposite:

p-value:1e-1
log p-value:-2.410e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.05%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets461.1 +/- 280.3bp
Average Position of motif in Background473.3 +/- 350.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCTTGTGTTTTG-----
NNCTTTGTTTTGNTNNN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCTTGTGTTTTG
--CTGTGGTTTN

PB0123.1_Foxl1_2/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCTTGTGTTTTG----
NNTTTTGTTTTGATNT

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCTTGTGTTTTG
-NNTGTGGTTT-

pan/dmmpmm(Down)/fly

Match Rank:5
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CCTTGTGTTTTG
-----TGTTTTT

MA0058.2_MAX/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCTTGTGTTTTG
CCATGTGCTT--

PB0141.1_Isgf3g_2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCTTGTGTTTTG-
NNGTANTGTTTTNC

MA0002.2_RUNX1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTTGTGTTTTG
GTCTGTGGTTT-

MA0511.1_RUNX2/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCTTGTGTTTTG
GGGGTTTGTGGTTTG

ara/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CCTTGTGTTTTG-
---NNTGTTATTN