Information for 4-CGTATTAG (Motif 11)


Reverse Opposite:

p-value:1e0
log p-value:-1.082e+00
Information Content per bp:1.530
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif45.0
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets508.2 +/- 286.7bp
Average Position of motif in Background505.1 +/- 297.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0106.1_Arid5a_2/Jaspar

Match Rank:1
Score:0.73
Offset:-6
Orientation:reverse strand
Alignment:------CGTATTAG---
TNNTTTCGTATTNNANN

br-Z4/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CGTATTAG-
---ATTAGT

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CGTATTAG------
CCGTATTATAAACAA

bcd/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CGTATTAG---
NGGATTAGNGG

oc/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CGTATTAG---
ANCGGATTAGNGN

ECM22(MacIsaac)/Yeast

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CGTATTAG-
CTCGTATAAGC

ap/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CGTATTAG
-NNATTA-

MA0132.1_Pdx1/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CGTATTAG
--AATTAG

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CGTATTAG----
TGAACCGGATTAATGAA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CGTATTAG-
-GGATTAGC