Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 10312)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 10310)	% of Background Sequences with Motif
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.019e+00	1.0000	1916.0	18.58%	1896.0	18.39%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.010e+00	1.0000	69.0	0.67%	65.0	0.63%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.495e-01	1.0000	788.0	7.64%	776.0	7.53%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-9.074e-01	1.0000	1368.0	13.27%	1355.0	13.14%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-9.025e-01	1.0000	1176.0	11.41%	1164.0	11.29%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-8.790e-01	1.0000	2836.0	27.51%	2821.8	27.37%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-8.733e-01	1.0000	3105.0	30.12%	3090.8	29.98%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.717e-01	1.0000	3191.0	30.95%	3176.8	30.81%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.702e-01	1.0000	4466.0	43.32%	4450.9	43.17%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-8.608e-01	1.0000	1896.0	18.39%	1884.5	18.28%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-8.556e-01	1.0000	5904.0	57.26%	5890.0	57.13%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-8.552e-01	1.0000	4889.0	47.42%	4874.1	47.28%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.484e-01	1.0000	2918.0	28.30%	2905.0	28.18%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-8.460e-01	1.0000	819.0	7.94%	811.8	7.87%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-8.458e-01	1.0000	2373.0	23.02%	2361.1	22.90%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-8.438e-01	1.0000	1909.0	18.52%	1898.1	18.41%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.405e-01	1.0000	3428.0	33.25%	3415.8	33.13%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-8.373e-01	1.0000	1239.0	12.02%	1230.6	11.94%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.366e-01	1.0000	289.0	2.80%	285.0	2.76%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-8.365e-01	1.0000	2799.0	27.15%	2788.0	27.04%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.334e-01	1.0000	2260.0	21.92%	2249.0	21.81%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.322e-01	1.0000	3050.0	29.58%	3038.1	29.47%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.291e-01	1.0000	5295.0	51.36%	5283.0	51.24%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-8.260e-01	1.0000	1473.0	14.29%	1464.0	14.20%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-8.164e-01	1.0000	1271.0	12.33%	1263.8	12.26%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-8.145e-01	1.0000	1799.0	17.45%	1790.9	17.37%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.101e-01	1.0000	1005.0	9.75%	998.9	9.69%
SeqBias: CA-repeat	CACACACACA	1e0	-8.068e-01	1.0000	10055.0	97.53%	10050.1	97.48%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-8.051e-01	1.0000	1100.0	10.67%	1093.0	10.60%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.048e-01	1.0000	3058.0	29.66%	3048.1	29.56%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-8.046e-01	1.0000	1579.0	15.32%	1571.5	15.24%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-8.027e-01	1.0000	773.0	7.50%	767.9	7.45%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.018e-01	1.0000	3317.0	32.17%	3307.1	32.08%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-7.963e-01	1.0000	2668.0	25.88%	2660.0	25.80%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.940e-01	1.0000	2833.0	27.48%	2824.9	27.40%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.936e-01	1.0000	1380.0	13.39%	1373.7	13.32%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-7.930e-01	1.0000	6198.0	60.12%	6189.0	60.03%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.920e-01	1.0000	5248.0	50.90%	5238.6	50.81%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-7.916e-01	1.0000	2092.0	20.29%	2084.4	20.22%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-7.893e-01	1.0000	625.0	6.06%	620.1	6.01%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.878e-01	1.0000	1569.0	15.22%	1562.9	15.16%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-7.849e-01	1.0000	42.0	0.41%	41.0	0.40%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-7.818e-01	1.0000	4429.0	42.96%	4420.9	42.88%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.813e-01	1.0000	408.0	3.96%	404.9	3.93%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-7.809e-01	1.0000	6286.0	60.97%	6277.7	60.89%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.805e-01	1.0000	1229.0	11.92%	1223.0	11.86%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.784e-01	1.0000	436.0	4.23%	433.0	4.20%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.764e-01	1.0000	3244.0	31.46%	3236.6	31.39%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.735e-01	1.0000	3634.0	35.25%	3626.8	35.18%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.733e-01	1.0000	492.0	4.77%	488.0	4.73%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.722e-01	1.0000	505.0	4.90%	501.9	4.87%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-7.713e-01	1.0000	2451.0	23.77%	2444.7	23.71%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.680e-01	1.0000	9149.0	88.74%	9143.8	88.69%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.679e-01	1.0000	5794.0	56.20%	5786.1	56.12%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.673e-01	1.0000	250.0	2.42%	247.9	2.40%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-7.672e-01	1.0000	1753.0	17.00%	1747.0	16.94%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.670e-01	1.0000	577.0	5.60%	573.7	5.56%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.654e-01	1.0000	602.0	5.84%	598.9	5.81%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.644e-01	1.0000	270.0	2.62%	267.8	2.60%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-7.628e-01	1.0000	3346.0	32.45%	3339.1	32.39%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-7.601e-01	1.0000	304.0	2.95%	301.0	2.92%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.570e-01	1.0000	4694.0	45.53%	4688.0	45.47%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-7.563e-01	1.0000	85.0	0.82%	84.0	0.81%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.559e-01	1.0000	1493.0	14.48%	1488.8	14.44%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-7.554e-01	1.0000	1523.0	14.77%	1518.3	14.73%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-7.552e-01	1.0000	1531.0	14.85%	1526.5	14.81%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-7.541e-01	1.0000	365.0	3.54%	362.0	3.51%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.515e-01	1.0000	923.0	8.95%	920.0	8.92%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.504e-01	1.0000	959.0	9.30%	956.0	9.27%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.494e-01	1.0000	106.0	1.03%	105.0	1.02%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.483e-01	1.0000	3723.0	36.11%	3717.1	36.05%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.480e-01	1.0000	448.0	4.35%	445.9	4.33%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-7.479e-01	1.0000	450.0	4.36%	447.9	4.34%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-7.472e-01	1.0000	9034.0	87.62%	9029.3	87.58%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.461e-01	1.0000	2176.0	21.11%	2172.0	21.07%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-7.460e-01	1.0000	482.0	4.68%	479.8	4.65%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.456e-01	1.0000	489.0	4.74%	487.0	4.72%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-7.446e-01	1.0000	6452.0	62.58%	6446.0	62.52%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.442e-01	1.0000	5379.0	52.17%	5373.8	52.12%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.441e-01	1.0000	5559.0	53.92%	5553.7	53.87%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-7.427e-01	1.0000	1286.0	12.47%	1282.2	12.44%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.404e-01	1.0000	598.0	5.80%	595.1	5.77%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.403e-01	1.0000	601.0	5.83%	599.0	5.81%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.396e-01	1.0000	619.0	6.00%	616.0	5.98%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.372e-01	1.0000	1648.0	15.98%	1644.9	15.95%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-7.361e-01	1.0000	3741.0	36.29%	3736.3	36.24%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-7.343e-01	1.0000	4337.0	42.07%	4332.2	42.02%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-7.341e-01	1.0000	791.0	7.67%	788.3	7.65%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.339e-01	1.0000	4504.0	43.69%	4499.1	43.64%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.334e-01	1.0000	4737.0	45.95%	4732.5	45.90%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-7.333e-01	1.0000	6916.0	67.08%	6911.8	67.04%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-7.324e-01	1.0000	5837.0	56.61%	5833.0	56.58%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-7.314e-01	1.0000	2238.0	21.71%	2234.8	21.68%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.313e-01	1.0000	911.0	8.84%	908.1	8.81%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.293e-01	1.0000	1011.0	9.81%	1008.1	9.78%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-7.288e-01	1.0000	254.0	2.46%	252.0	2.44%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-7.271e-01	1.0000	1145.0	11.11%	1142.8	11.08%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-7.264e-01	1.0000	3108.0	30.15%	3104.3	30.11%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-7.263e-01	1.0000	3114.0	30.20%	3110.3	30.17%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-7.261e-01	1.0000	1215.0	11.78%	1212.9	11.76%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.258e-01	1.0000	1242.0	12.05%	1239.4	12.02%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.251e-01	1.0000	313.0	3.04%	311.0	3.02%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.248e-01	1.0000	1316.0	12.76%	1313.3	12.74%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.247e-01	1.0000	1326.0	12.86%	1323.8	12.84%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.236e-01	1.0000	1428.0	13.85%	1425.1	13.82%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.234e-01	1.0000	3978.0	38.58%	3974.9	38.55%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.231e-01	1.0000	354.0	3.43%	352.1	3.41%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.231e-01	1.0000	354.0	3.43%	352.1	3.41%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.231e-01	1.0000	354.0	3.43%	352.0	3.41%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-7.230e-01	1.0000	1482.0	14.37%	1479.1	14.35%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.228e-01	1.0000	1504.0	14.59%	1501.3	14.56%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-7.226e-01	1.0000	1519.0	14.73%	1516.0	14.70%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-7.221e-01	1.0000	4582.0	44.44%	4578.7	44.41%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.221e-01	1.0000	1580.0	15.32%	1577.9	15.30%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-7.218e-01	1.0000	1611.0	15.63%	1608.1	15.60%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-7.213e-01	1.0000	7141.0	69.26%	7137.1	69.23%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-7.207e-01	1.0000	6145.0	59.60%	6141.8	59.57%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-7.176e-01	1.0000	2209.0	21.43%	2206.8	21.40%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-7.174e-01	1.0000	526.0	5.10%	524.1	5.08%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-7.166e-01	1.0000	2420.0	23.47%	2417.2	23.45%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-7.158e-01	1.0000	2589.0	25.11%	2587.0	25.09%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-7.155e-01	1.0000	9481.0	91.96%	9478.7	91.94%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-7.154e-01	1.0000	2679.0	25.98%	2676.5	25.96%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.152e-01	1.0000	2741.0	26.59%	2738.9	26.57%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.147e-01	1.0000	658.0	6.38%	656.0	6.36%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-7.146e-01	1.0000	660.0	6.40%	658.2	6.38%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-7.139e-01	1.0000	3115.0	30.21%	3112.0	30.18%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.132e-01	1.0000	3352.0	32.51%	3349.4	32.49%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.132e-01	1.0000	3358.0	32.57%	3355.4	32.54%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.132e-01	1.0000	9200.0	89.23%	9197.4	89.21%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-7.128e-01	1.0000	3514.0	34.08%	3511.8	34.06%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-7.128e-01	1.0000	3526.0	34.20%	3524.0	34.18%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.123e-01	1.0000	817.0	7.92%	815.8	7.91%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.112e-01	1.0000	904.0	8.77%	902.9	8.76%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.108e-01	1.0000	4515.0	43.79%	4512.6	43.77%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.106e-01	1.0000	960.0	9.31%	958.2	9.29%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-7.106e-01	1.0000	4634.0	44.95%	4631.1	44.92%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.104e-01	1.0000	987.0	9.57%	985.2	9.56%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.097e-01	1.0000	5368.0	52.07%	5365.5	52.04%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-7.095e-01	1.0000	7938.0	76.99%	7935.6	76.97%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-7.094e-01	1.0000	1101.0	10.68%	1099.1	10.66%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.091e-01	1.0000	1135.0	11.01%	1133.0	10.99%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-7.091e-01	1.0000	7279.0	70.60%	7276.9	70.58%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.090e-01	1.0000	7104.0	68.90%	7101.1	68.88%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-7.075e-01	1.0000	1361.0	13.20%	1359.0	13.18%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-7.075e-01	1.0000	1364.0	13.23%	1362.7	13.22%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.068e-01	1.0000	1485.0	14.40%	1484.0	14.39%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-7.063e-01	1.0000	1577.0	15.30%	1575.0	15.28%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-7.062e-01	1.0000	1593.0	15.45%	1591.3	15.43%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-7.059e-01	1.0000	1657.0	16.07%	1655.1	16.05%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-7.054e-01	1.0000	1767.0	17.14%	1765.3	17.12%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.052e-01	1.0000	1828.0	17.73%	1826.9	17.72%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.049e-01	1.0000	1891.0	18.34%	1889.8	18.33%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-7.047e-01	1.0000	1948.0	18.89%	1946.2	18.88%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-7.037e-01	1.0000	2264.0	21.96%	2262.1	21.94%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-7.036e-01	1.0000	2296.0	22.27%	2294.8	22.26%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.034e-01	1.0000	2376.0	23.05%	2374.9	23.03%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-7.022e-01	1.0000	2819.0	27.34%	2817.2	27.33%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.021e-01	1.0000	2864.0	27.78%	2862.5	27.76%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-7.019e-01	1.0000	2965.0	28.76%	2963.5	28.74%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.017e-01	1.0000	3089.0	29.96%	3087.9	29.95%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-7.016e-01	1.0000	3124.0	30.30%	3122.1	30.28%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-7.010e-01	1.0000	3452.0	33.48%	3450.5	33.47%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-7.009e-01	1.0000	3527.0	34.21%	3525.4	34.19%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-7.008e-01	1.0000	3552.0	34.45%	3550.5	34.44%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-6.998e-01	1.0000	4291.0	41.62%	4289.4	41.60%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.992e-01	1.0000	4702.0	45.61%	4700.9	45.60%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-6.987e-01	1.0000	5161.0	50.06%	5159.8	50.05%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-6.974e-01	1.0000	6548.0	63.51%	6546.1	63.49%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.973e-01	1.0000	6679.0	64.78%	6677.6	64.77%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-6.972e-01	1.0000	6745.0	65.42%	6743.5	65.41%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.966e-01	1.0000	7502.0	72.76%	7500.8	72.75%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-6.929e-01	1.0000	22.0	0.21%	22.0	0.21%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-6.929e-01	1.0000	25.0	0.24%	25.0	0.24%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.928e-01	1.0000	32.0	0.31%	32.0	0.31%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-6.928e-01	1.0000	51.0	0.49%	51.0	0.49%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.927e-01	1.0000	69.0	0.67%	68.8	0.67%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.927e-01	1.0000	73.0	0.71%	72.9	0.71%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.926e-01	1.0000	99.0	0.96%	99.0	0.96%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.926e-01	1.0000	115.0	1.12%	114.9	1.11%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.924e-01	1.0000	173.0	1.68%	173.0	1.68%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.922e-01	1.0000	267.0	2.59%	266.8	2.59%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.922e-01	1.0000	282.0	2.74%	282.0	2.73%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.922e-01	1.0000	297.0	2.88%	296.8	2.88%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.920e-01	1.0000	390.0	3.78%	389.9	3.78%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.920e-01	1.0000	402.0	3.90%	401.8	3.90%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-6.919e-01	1.0000	460.0	4.46%	459.9	4.46%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.919e-01	1.0000	461.0	4.47%	461.0	4.47%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.919e-01	1.0000	476.0	4.62%	475.0	4.61%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.918e-01	1.0000	591.0	5.73%	590.1	5.72%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.917e-01	1.0000	662.0	6.42%	661.6	6.42%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.917e-01	1.0000	669.0	6.49%	668.8	6.49%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.917e-01	1.0000	690.0	6.69%	689.9	6.69%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.916e-01	1.0000	750.0	7.27%	749.3	7.27%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-6.916e-01	1.0000	772.0	7.49%	771.9	7.49%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-6.915e-01	1.0000	801.0	7.77%	800.1	7.76%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.915e-01	1.0000	857.0	8.31%	856.9	8.31%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.914e-01	1.0000	890.0	8.63%	889.8	8.63%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.914e-01	1.0000	925.0	8.97%	924.8	8.97%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-6.914e-01	1.0000	932.0	9.04%	931.1	9.03%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.914e-01	1.0000	969.0	9.40%	968.0	9.39%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.913e-01	1.0000	1024.0	9.93%	1023.0	9.92%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.913e-01	1.0000	1050.0	10.18%	1049.9	10.18%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.907e-01	1.0000	1687.0	16.36%	1686.4	16.36%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-6.906e-01	1.0000	1806.0	17.52%	1805.1	17.51%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.905e-01	1.0000	1962.0	19.03%	1961.7	19.03%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-6.904e-01	1.0000	1988.0	19.28%	1987.9	19.28%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.903e-01	1.0000	2194.0	21.28%	2193.8	21.28%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.902e-01	1.0000	2238.0	21.71%	2237.5	21.70%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.900e-01	1.0000	2491.0	24.16%	2490.3	24.15%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.900e-01	1.0000	2535.0	24.59%	2534.9	24.59%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.899e-01	1.0000	2584.0	25.06%	2583.4	25.06%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-6.899e-01	1.0000	2634.0	25.55%	2633.6	25.54%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.899e-01	1.0000	2652.0	25.72%	2651.6	25.72%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.897e-01	1.0000	2828.0	27.43%	2827.3	27.42%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.896e-01	1.0000	3001.0	29.11%	3000.0	29.10%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-6.895e-01	1.0000	3129.0	30.35%	3128.4	30.34%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.894e-01	1.0000	3187.0	30.91%	3186.4	30.91%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-6.893e-01	1.0000	3406.0	33.04%	3405.4	33.03%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.890e-01	1.0000	3651.0	35.41%	3651.0	35.41%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-6.890e-01	1.0000	3703.0	35.92%	3702.9	35.92%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-6.889e-01	1.0000	3804.0	36.90%	3803.5	36.89%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.888e-01	1.0000	3969.0	38.50%	3968.5	38.49%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-6.885e-01	1.0000	4246.0	41.18%	4245.1	41.17%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.882e-01	1.0000	4584.0	44.46%	4583.1	44.45%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.879e-01	1.0000	4842.0	46.96%	4842.0	46.96%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.867e-01	1.0000	5914.0	57.36%	5914.0	57.36%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.867e-01	1.0000	5953.0	57.74%	5952.7	57.74%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.867e-01	1.0000	5961.0	57.82%	5960.7	57.81%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.862e-01	1.0000	6290.0	61.01%	6289.8	61.01%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-6.834e-01	1.0000	7794.0	75.60%	7793.9	75.60%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.811e-01	1.0000	8530.0	82.74%	8529.2	82.73%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.789e-01	1.0000	8967.0	86.97%	8966.6	86.97%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.776e-01	1.0000	3361.0	32.60%	3361.4	32.60%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.775e-01	1.0000	3727.0	36.15%	3727.2	36.15%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.775e-01	1.0000	3863.0	37.47%	3863.9	37.48%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.774e-01	1.0000	2911.0	28.23%	2911.1	28.24%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.774e-01	1.0000	2904.0	28.17%	2904.7	28.17%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.774e-01	1.0000	4156.0	40.31%	4156.5	40.32%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-6.773e-01	1.0000	2720.0	26.38%	2720.2	26.38%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.773e-01	1.0000	4392.0	42.60%	4392.2	42.60%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.772e-01	1.0000	4461.0	43.27%	4461.5	43.27%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.771e-01	1.0000	2439.0	23.66%	2439.0	23.66%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-6.770e-01	1.0000	2329.0	22.59%	2329.5	22.59%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-6.769e-01	1.0000	4858.0	47.12%	4858.6	47.13%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-6.768e-01	1.0000	2205.0	21.39%	2205.2	21.39%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.766e-01	1.0000	2072.0	20.10%	2072.9	20.11%
Tal1	CATCTG	1e0	-6.766e-01	1.0000	5214.0	50.57%	5214.7	50.58%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-6.765e-01	1.0000	5218.0	50.61%	5218.9	50.62%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.765e-01	1.0000	2005.0	19.45%	2005.6	19.45%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.765e-01	1.0000	1975.0	19.16%	1975.7	19.16%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.760e-01	1.0000	1763.0	17.10%	1763.5	17.10%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-6.760e-01	1.0000	5657.0	54.87%	5657.8	54.88%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.757e-01	1.0000	1633.0	15.84%	1634.0	15.85%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-6.732e-01	1.0000	1061.0	10.29%	1061.1	10.29%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.729e-01	1.0000	1023.0	9.92%	1023.7	9.93%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.722e-01	1.0000	928.0	9.00%	928.1	9.00%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-6.718e-01	1.0000	882.0	8.55%	882.0	8.56%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-6.714e-01	1.0000	7608.0	73.79%	7608.2	73.79%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.714e-01	1.0000	836.0	8.11%	836.0	8.11%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.684e-01	1.0000	602.0	5.84%	603.0	5.85%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-6.663e-01	1.0000	4056.0	39.34%	4057.3	39.35%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-6.663e-01	1.0000	3938.0	38.20%	3939.9	38.21%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.663e-01	1.0000	3897.0	37.80%	3898.1	37.81%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.660e-01	1.0000	4919.0	47.71%	4920.7	47.73%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.658e-01	1.0000	3206.0	31.10%	3207.9	31.11%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.658e-01	1.0000	5119.0	49.65%	5120.1	49.66%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.657e-01	1.0000	471.0	4.57%	471.0	4.57%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.655e-01	1.0000	2990.0	29.00%	2991.3	29.01%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-6.654e-01	1.0000	2945.0	28.56%	2946.6	28.58%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.654e-01	1.0000	2901.0	28.14%	2902.3	28.15%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.653e-01	1.0000	2886.0	27.99%	2887.9	28.01%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.647e-01	1.0000	5910.0	57.32%	5911.3	57.34%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.641e-01	1.0000	411.0	3.99%	411.1	3.99%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.641e-01	1.0000	411.0	3.99%	411.9	4.00%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.640e-01	1.0000	2324.0	22.54%	2325.5	22.56%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.639e-01	1.0000	407.0	3.95%	407.1	3.95%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.635e-01	1.0000	6425.0	62.32%	6426.9	62.34%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-6.634e-01	1.0000	390.0	3.78%	390.1	3.78%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.634e-01	1.0000	2140.0	20.76%	2141.8	20.77%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-6.632e-01	1.0000	385.0	3.73%	385.7	3.74%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.632e-01	1.0000	385.0	3.73%	386.0	3.74%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.632e-01	1.0000	2094.0	20.31%	2095.0	20.32%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.625e-01	1.0000	366.0	3.55%	366.0	3.55%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.625e-01	1.0000	365.0	3.54%	365.0	3.54%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.622e-01	1.0000	356.0	3.45%	356.8	3.46%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-6.600e-01	1.0000	1515.0	14.69%	1516.7	14.71%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-6.594e-01	1.0000	294.0	2.85%	294.1	2.85%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.587e-01	1.0000	1352.0	13.11%	1353.9	13.13%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.573e-01	1.0000	257.0	2.49%	257.0	2.49%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.566e-01	1.0000	1156.0	11.21%	1157.8	11.23%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-6.564e-01	1.0000	243.0	2.36%	243.8	2.36%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.554e-01	1.0000	4242.0	41.14%	4244.9	41.17%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.551e-01	1.0000	5050.0	48.98%	5052.0	49.00%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-6.548e-01	1.0000	3578.0	34.70%	3580.3	34.73%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-6.548e-01	1.0000	5313.0	51.53%	5315.3	51.55%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.538e-01	1.0000	5914.0	57.36%	5916.7	57.39%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-6.535e-01	1.0000	6032.0	58.51%	6034.8	58.53%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-6.529e-01	1.0000	2724.0	26.42%	2726.3	26.44%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.518e-01	1.0000	6626.0	64.27%	6628.3	64.29%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.509e-01	1.0000	2262.0	21.94%	2264.2	21.96%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.508e-01	1.0000	796.0	7.72%	797.9	7.74%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.505e-01	1.0000	9638.0	93.48%	9638.9	93.49%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-6.501e-01	1.0000	762.0	7.39%	763.8	7.41%
SeqBias: TA-repeat	TATATATATA	1e0	-6.500e-01	1.0000	7070.0	68.57%	7072.1	68.59%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.496e-01	1.0000	744.0	7.22%	745.0	7.23%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.488e-01	1.0000	709.0	6.88%	710.1	6.89%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.487e-01	1.0000	708.0	6.87%	709.7	6.88%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-6.487e-01	1.0000	1924.0	18.66%	1926.0	18.68%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.482e-01	1.0000	7421.0	71.98%	7423.7	72.01%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.475e-01	1.0000	7538.0	73.11%	7540.0	73.13%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-6.468e-01	1.0000	1690.0	16.39%	1692.1	16.41%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.442e-01	1.0000	5327.0	51.67%	5330.1	51.70%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.431e-01	1.0000	1364.0	13.23%	1366.6	13.25%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.424e-01	1.0000	3108.0	30.15%	3111.6	30.18%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-6.424e-01	1.0000	3105.0	30.12%	3108.1	30.15%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.417e-01	1.0000	2916.0	28.28%	2919.2	28.31%
SeqBias: CG bias	SSSSSSSSSS	1e0	-6.415e-01	1.0000	10198.0	98.91%	10197.4	98.91%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.414e-01	1.0000	1248.0	12.10%	1250.1	12.13%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-6.411e-01	1.0000	8309.0	80.59%	8311.7	80.62%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.408e-01	1.0000	6611.0	64.12%	6614.0	64.15%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.404e-01	1.0000	2642.0	25.63%	2645.8	25.66%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.384e-01	1.0000	2300.0	22.31%	2303.5	22.34%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.382e-01	1.0000	7145.0	69.30%	7148.8	69.34%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.372e-01	1.0000	7308.0	70.88%	7311.3	70.91%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-6.370e-01	1.0000	9928.0	96.29%	9928.4	96.30%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.365e-01	1.0000	405.0	3.93%	406.0	3.94%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.355e-01	1.0000	1955.0	18.96%	1958.6	19.00%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.349e-01	1.0000	924.0	8.96%	926.0	8.98%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-6.341e-01	1.0000	4693.0	45.52%	4697.2	45.56%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.341e-01	1.0000	4856.0	47.10%	4860.1	47.14%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-6.335e-01	1.0000	874.0	8.48%	876.0	8.50%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.333e-01	1.0000	5527.0	53.61%	5531.8	53.65%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-6.330e-01	1.0000	3703.0	35.92%	3707.7	35.96%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.322e-01	1.0000	6002.0	58.22%	6006.4	58.26%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-6.319e-01	1.0000	819.0	7.94%	821.0	7.96%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.312e-01	1.0000	6304.0	61.14%	6308.7	61.19%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-6.310e-01	1.0000	3104.0	30.11%	3109.0	30.15%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-6.307e-01	1.0000	3033.0	29.42%	3037.1	29.46%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.301e-01	1.0000	6571.0	63.73%	6575.4	63.78%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-6.288e-01	1.0000	305.0	2.96%	306.1	2.97%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.282e-01	1.0000	2595.0	25.17%	2599.8	25.22%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-6.276e-01	1.0000	1358.0	13.17%	1361.3	13.20%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.249e-01	1.0000	1222.0	11.85%	1225.1	11.88%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-6.244e-01	1.0000	7469.0	72.44%	7473.7	72.49%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.229e-01	1.0000	61.0	0.59%	61.0	0.59%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.211e-01	1.0000	560.0	5.43%	562.8	5.46%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.175e-01	1.0000	946.0	9.18%	949.1	9.21%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.157e-01	1.0000	893.0	8.66%	896.0	8.69%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-6.134e-01	1.0000	4646.0	45.06%	4652.5	45.13%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.134e-01	1.0000	4631.0	44.92%	4637.4	44.98%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.131e-01	1.0000	5230.0	50.73%	5237.0	50.80%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.131e-01	1.0000	4362.0	42.31%	4368.3	42.37%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.112e-01	1.0000	418.0	4.05%	420.1	4.07%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-6.109e-01	1.0000	3552.0	34.45%	3558.7	34.52%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.078e-01	1.0000	1858.0	18.02%	1863.9	18.08%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.075e-01	1.0000	378.0	3.67%	380.1	3.69%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.074e-01	1.0000	1837.0	17.82%	1842.1	17.87%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-6.047e-01	1.0000	352.0	3.41%	354.0	3.43%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.019e-01	1.0000	35.0	0.34%	35.0	0.34%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.987e-01	1.0000	132.0	1.28%	133.0	1.29%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-5.973e-01	1.0000	2013.0	19.52%	2019.4	19.59%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.967e-01	1.0000	1330.0	12.90%	1335.4	12.95%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-5.951e-01	1.0000	30.0	0.29%	30.0	0.29%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-5.935e-01	1.0000	2643.0	25.64%	2650.5	25.71%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.911e-01	1.0000	1677.0	16.27%	1684.0	16.33%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-5.905e-01	1.0000	110.0	1.07%	111.1	1.08%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.889e-01	1.0000	3400.0	32.98%	3408.3	33.06%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.874e-01	1.0000	699.0	6.78%	703.0	6.82%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.802e-01	1.0000	8147.0	79.02%	8154.1	79.09%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-5.773e-01	1.0000	3250.0	31.52%	3259.9	31.62%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-5.759e-01	1.0000	10228.0	99.20%	10229.0	99.21%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-5.729e-01	1.0000	8478.0	82.23%	8485.4	82.30%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-5.643e-01	1.0000	67.0	0.65%	69.0	0.67%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.629e-01	1.0000	8377.0	81.25%	8385.7	81.34%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-5.592e-01	1.0000	140.0	1.36%	143.0	1.39%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-5.576e-01	1.0000	3366.0	32.65%	3377.8	32.76%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.565e-01	1.0000	242.0	2.35%	245.2	2.38%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-5.435e-01	1.0000	12.0	0.12%	12.0	0.12%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-5.429e-01	1.0000	10004.0	97.03%	10007.4	97.07%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-5.194e-01	1.0000	78.0	0.76%	80.0	0.78%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-4.732e-01	1.0000	10305.0	99.95%	10305.0	99.95%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	0.000e+00	1.0000	10310.0	100.00%	10310.0	100.00%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	0.000e+00	1.0000	10310.0	100.00%	10310.0	100.00%
SeqBias: G/A bias	RRRRRRRRRR	1e0	0.000e+00	1.0000	10310.0	100.00%	10310.0	100.00%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	0.000e+00	1.0000	10310.0	100.00%	10310.0	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	10310.0	100.00%	10310.0	100.00%