Information for 5-GAGGCGAGGCGA (Motif 8)


Reverse Opposite:

p-value:1e0
log p-value:-1.485e+00
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.05%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets540.0 +/- 237.1bp
Average Position of motif in Background500.0 +/- 247.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sp1(Zf)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCGAGGCGA
GGGGGCGGGGCC-

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGGCGAGGCGA-
CAAAGGCGTGGCCAG

SP2/MA0516.1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGCGAGGCGA
GGGNGGGGGCGGGGC--

SP1/MA0079.3/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCGAGGCGA
GGGGGCGGGGC--

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GAGGCGAGGCGA-
NAGANTGGCGGGGNGNA

SUT1?/SacCer-Promoters/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGGCGAGGCGA
---GCGCGGGG-

SP4/MA0685.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GAGGCGAGGCGA-
NAAGGGGGCGTGGCTTN

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGGCGAGGCGA
DGGGYGKGGC--

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGGCGAGGCGA
AGGGGGCGGGGCTG

KLF16/MA0741.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCGAGGCGA
GGGGGCGTGGC--