Information for 2-GCGAGCGGTC (Motif 4)


Reverse Opposite:

p-value:1e0
log p-value:-1.934e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets462.0 +/- 256.9bp
Average Position of motif in Background420.4 +/- 272.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCGAGCGGTC------
GGCGAGGGGTCAAGGGC

SUT1?/SacCer-Promoters/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCGAGCGGTC
GCGCGGGG--

GLIS2/MA0736.1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCGAGCGGTC
CTTCGCGGGGGGTC

opa/MA0456.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCGAGCGGTC
CAGCGGGGGGTC

Adf1/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCGAGCGGTC-
---CGCGGTCG

opa/dmmpmm(Noyes)/fly

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCGAGCGGTC
CAGCGGGGGGTC

RSC30/MA0375.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCGAGCGGTC
CGCGCGCG---

PH0140.1_Pknox1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCGAGCGGTC-----
AAAGACCTGTCAATCC

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCGAGCGGTC------
NTNNNGGGGTCANGNNN

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCGAGCGGTC------
CTCCAGGGGTCAATTGA