Information for 1-CCGTGRTTTA (Motif 1)


Reverse Opposite:

p-value:1e-1
log p-value:-3.642e+00
Information Content per bp:1.763
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets560.0 +/- 308.1bp
Average Position of motif in Background657.9 +/- 287.5bp
Strand Bias (log2 ratio + to - strand density)2.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCGTGRTTTA-----
--NTGATTTATGGCC

Gfi1b/MA0483.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCGTGRTTTA
TGCTGTGATTT-

bin/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCGTGRTTTA
TCGTTGTTTA

PB0179.1_Sp100_2/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCGTGRTTTA----
TCCGTCGCTTAAAAG

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCGTGRTTTA
GCTGTGGTTT-

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCGTGRTTTA-----
---TGATTTATGGCC

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCGTGRTTTA
NNTGTGGTTT-

ARO80/MA0273.1/Jaspar

Match Rank:8
Score:0.58
Offset:-9
Orientation:reverse strand
Alignment:---------CCGTGRTTTA--
NNNNANTTNCCGAGANNTNNC

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCGTGRTTTA
GTCTGTGGTTT-

STB5(MacIsaac)/Yeast

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCGTGRTTTA
CGGTGTTATA