Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3043)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 3077)	% of Background Sequences with Motif
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.064e+00	1.0000	14.0	0.46%	12.0	0.39%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.315e-01	1.0000	268.0	8.78%	261.9	8.58%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-8.996e-01	1.0000	355.0	11.63%	348.8	11.43%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-8.994e-01	1.0000	507.0	16.61%	499.8	16.38%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-8.868e-01	1.0000	582.0	19.07%	574.2	18.81%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-8.771e-01	1.0000	449.0	14.71%	443.0	14.51%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.770e-01	1.0000	962.0	31.52%	953.2	31.23%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.647e-01	1.0000	52.0	1.70%	50.0	1.64%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.623e-01	1.0000	1295.0	42.43%	1286.6	42.16%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-8.602e-01	1.0000	1388.0	45.48%	1379.8	45.21%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-8.592e-01	1.0000	226.0	7.40%	221.1	7.24%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.583e-01	1.0000	1530.0	50.13%	1521.0	49.84%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-8.546e-01	1.0000	908.0	29.75%	900.2	29.49%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.536e-01	1.0000	924.0	30.28%	917.0	30.04%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-8.364e-01	1.0000	790.0	25.88%	784.0	25.69%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-8.355e-01	1.0000	803.0	26.31%	796.9	26.11%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.313e-01	1.0000	867.0	28.41%	860.7	28.20%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-8.305e-01	1.0000	178.0	5.83%	174.2	5.71%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.289e-01	1.0000	182.0	5.96%	178.8	5.86%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-8.284e-01	1.0000	919.0	30.11%	912.8	29.91%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.278e-01	1.0000	930.0	30.47%	923.2	30.25%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.277e-01	1.0000	933.0	30.57%	926.8	30.37%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-8.269e-01	1.0000	82.0	2.69%	80.0	2.62%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-8.255e-01	1.0000	978.0	32.04%	971.2	31.82%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.211e-01	1.0000	378.0	12.39%	373.2	12.23%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.204e-01	1.0000	90.0	2.95%	87.9	2.88%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.181e-01	1.0000	674.0	22.08%	668.2	21.89%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-8.137e-01	1.0000	733.0	24.02%	727.8	23.85%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-8.052e-01	1.0000	881.0	28.87%	875.9	28.70%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.022e-01	1.0000	278.0	9.11%	275.0	9.01%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-7.999e-01	1.0000	1008.0	33.03%	1002.4	32.84%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-7.983e-01	1.0000	571.0	18.71%	566.9	18.58%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.975e-01	1.0000	1079.0	35.35%	1073.4	35.17%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.969e-01	1.0000	132.0	4.33%	130.0	4.26%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-7.941e-01	1.0000	324.0	10.62%	321.0	10.52%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-7.922e-01	1.0000	144.0	4.72%	142.0	4.65%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-7.891e-01	1.0000	1566.0	51.31%	1560.0	51.11%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.889e-01	1.0000	1599.0	52.39%	1593.7	52.22%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-7.888e-01	1.0000	1749.0	57.31%	1743.1	57.11%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-7.887e-01	1.0000	1700.0	55.70%	1694.9	55.54%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.869e-01	1.0000	740.0	24.25%	735.8	24.11%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.845e-01	1.0000	168.0	5.50%	165.9	5.44%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.839e-01	1.0000	170.0	5.57%	167.9	5.50%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-7.825e-01	1.0000	831.0	27.23%	826.2	27.07%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.820e-01	1.0000	177.0	5.80%	174.0	5.70%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-7.817e-01	1.0000	850.0	27.85%	845.7	27.71%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.812e-01	1.0000	180.0	5.90%	177.9	5.83%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.799e-01	1.0000	439.0	14.38%	435.7	14.28%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-7.740e-01	1.0000	509.0	16.68%	505.9	16.57%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-7.736e-01	1.0000	214.0	7.01%	211.9	6.94%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-7.707e-01	1.0000	1240.0	40.63%	1235.4	40.48%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-7.699e-01	1.0000	567.0	18.58%	563.8	18.47%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.666e-01	1.0000	1635.0	53.57%	1630.1	53.41%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-7.665e-01	1.0000	256.0	8.39%	253.8	8.32%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-7.627e-01	1.0000	702.0	23.00%	698.9	22.90%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.608e-01	1.0000	2670.0	87.48%	2666.9	87.38%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.606e-01	1.0000	301.0	9.86%	299.0	9.80%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-7.589e-01	1.0000	316.0	10.35%	313.2	10.26%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.513e-01	1.0000	1079.0	35.35%	1075.8	35.25%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-7.482e-01	1.0000	447.0	14.65%	444.3	14.56%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.471e-01	1.0000	466.0	15.27%	463.9	15.20%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.457e-01	1.0000	2139.0	70.09%	2135.7	69.98%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.454e-01	1.0000	496.0	16.25%	493.9	16.18%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.445e-01	1.0000	513.0	16.81%	510.2	16.72%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.440e-01	1.0000	125.0	4.10%	123.0	4.03%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-7.440e-01	1.0000	524.0	17.17%	521.2	17.08%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.419e-01	1.0000	569.0	18.64%	566.8	18.57%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.412e-01	1.0000	139.0	4.55%	137.1	4.49%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.397e-01	1.0000	625.0	20.48%	622.1	20.38%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.372e-01	1.0000	163.0	5.34%	161.9	5.31%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.360e-01	1.0000	737.0	24.15%	734.8	24.08%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-7.346e-01	1.0000	791.0	25.92%	788.8	25.85%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.313e-01	1.0000	941.0	30.83%	938.8	30.76%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.307e-01	1.0000	973.0	31.88%	970.6	31.80%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.299e-01	1.0000	227.0	7.44%	226.0	7.40%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.275e-01	1.0000	2637.0	86.40%	2634.5	86.32%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.270e-01	1.0000	264.0	8.65%	262.9	8.61%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-7.266e-01	1.0000	1265.0	41.45%	1262.7	41.37%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-7.262e-01	1.0000	1298.0	42.53%	1295.4	42.44%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.260e-01	1.0000	278.0	9.11%	277.0	9.08%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.259e-01	1.0000	1334.0	43.71%	1331.4	43.62%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.258e-01	1.0000	1345.0	44.07%	1342.1	43.97%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-7.244e-01	1.0000	1514.0	49.61%	1511.1	49.51%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.241e-01	1.0000	1549.0	50.75%	1546.1	50.66%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.241e-01	1.0000	1555.0	50.95%	1552.8	50.88%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.236e-01	1.0000	317.0	10.39%	315.1	10.32%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.228e-01	1.0000	333.0	10.91%	332.0	10.88%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-7.219e-01	1.0000	351.0	11.50%	349.9	11.46%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.199e-01	1.0000	398.0	13.04%	396.9	13.01%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-7.196e-01	1.0000	405.0	13.27%	403.6	13.22%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.186e-01	1.0000	434.0	14.22%	432.0	14.16%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-7.181e-01	1.0000	447.0	14.65%	445.7	14.60%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-7.171e-01	1.0000	480.0	15.73%	478.9	15.69%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.168e-01	1.0000	491.0	16.09%	489.8	16.05%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-7.166e-01	1.0000	498.0	16.32%	496.9	16.28%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-7.163e-01	1.0000	509.0	16.68%	507.8	16.64%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-7.155e-01	1.0000	538.0	17.63%	536.6	17.58%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.137e-01	1.0000	616.0	20.18%	614.7	20.14%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-7.136e-01	1.0000	619.0	20.28%	617.7	20.24%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.131e-01	1.0000	642.0	21.04%	640.1	20.97%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.111e-01	1.0000	758.0	24.84%	756.6	24.79%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.110e-01	1.0000	762.0	24.97%	760.1	24.91%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-7.107e-01	1.0000	785.0	25.72%	783.6	25.68%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-7.093e-01	1.0000	884.0	28.96%	882.3	28.91%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-7.090e-01	1.0000	905.0	29.65%	903.7	29.61%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-7.086e-01	1.0000	937.0	30.70%	935.8	30.66%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.084e-01	1.0000	955.0	31.29%	953.4	31.24%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-7.078e-01	1.0000	1006.0	32.96%	1005.0	32.93%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.072e-01	1.0000	1064.0	34.86%	1062.6	34.82%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.070e-01	1.0000	1083.0	35.48%	1081.9	35.45%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.058e-01	1.0000	1217.0	39.88%	1215.0	39.81%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-7.041e-01	1.0000	1422.0	46.59%	1420.3	46.54%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.032e-01	1.0000	1561.0	51.15%	1559.3	51.09%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-7.019e-01	1.0000	1763.0	57.77%	1761.1	57.70%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-7.010e-01	1.0000	1922.0	62.98%	1920.6	62.93%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-7.009e-01	1.0000	1938.0	63.50%	1936.8	63.46%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-7.008e-01	1.0000	1962.0	64.29%	1960.6	64.24%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-7.002e-01	1.0000	2076.0	68.02%	2074.5	67.97%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.998e-01	1.0000	2151.0	70.48%	2149.9	70.44%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.978e-01	1.0000	2523.0	82.67%	2522.0	82.63%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.973e-01	1.0000	2622.0	85.91%	2620.6	85.87%
SeqBias: CA-repeat	CACACACACA	1e0	-6.950e-01	1.0000	2958.0	96.92%	2956.9	96.89%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-6.928e-01	1.0000	3.0	0.10%	3.0	0.10%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-6.927e-01	1.0000	6.0	0.20%	6.0	0.20%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.927e-01	1.0000	7.0	0.23%	6.9	0.23%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.923e-01	1.0000	19.0	0.62%	19.0	0.62%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-6.923e-01	1.0000	20.0	0.66%	20.0	0.66%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.916e-01	1.0000	69.0	2.26%	68.9	2.26%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.915e-01	1.0000	78.0	2.56%	78.0	2.56%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-6.915e-01	1.0000	80.0	2.62%	80.0	2.62%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.914e-01	1.0000	84.0	2.75%	83.9	2.75%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.914e-01	1.0000	89.0	2.92%	88.9	2.91%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-6.914e-01	1.0000	89.0	2.92%	88.9	2.91%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.911e-01	1.0000	113.0	3.70%	113.0	3.70%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.911e-01	1.0000	119.0	3.90%	119.0	3.90%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.911e-01	1.0000	123.0	4.03%	122.0	4.00%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-6.910e-01	1.0000	130.0	4.26%	129.9	4.26%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.910e-01	1.0000	134.0	4.39%	133.9	4.39%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-6.909e-01	1.0000	137.0	4.49%	136.7	4.48%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.908e-01	1.0000	148.0	4.85%	147.9	4.85%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.905e-01	1.0000	195.0	6.39%	194.7	6.38%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.905e-01	1.0000	199.0	6.52%	198.1	6.49%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-6.903e-01	1.0000	216.0	7.08%	215.2	7.05%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.902e-01	1.0000	229.0	7.50%	228.7	7.49%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.900e-01	1.0000	267.0	8.75%	266.8	8.74%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.900e-01	1.0000	271.0	8.88%	270.9	8.88%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.899e-01	1.0000	274.0	8.98%	273.0	8.95%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.899e-01	1.0000	284.0	9.31%	283.8	9.30%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.897e-01	1.0000	306.0	10.03%	305.9	10.02%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.896e-01	1.0000	327.0	10.71%	326.7	10.70%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-6.895e-01	1.0000	342.0	11.21%	341.2	11.18%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.893e-01	1.0000	379.0	12.42%	378.1	12.39%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-6.888e-01	1.0000	479.0	15.69%	478.1	15.66%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.887e-01	1.0000	497.0	16.28%	496.5	16.27%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.885e-01	1.0000	527.0	17.27%	526.8	17.26%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.882e-01	1.0000	581.0	19.04%	581.0	19.04%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.882e-01	1.0000	591.0	19.36%	590.7	19.35%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.880e-01	1.0000	615.0	20.15%	614.7	20.14%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-6.880e-01	1.0000	616.0	20.18%	615.0	20.15%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.878e-01	1.0000	650.0	21.30%	650.0	21.30%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.878e-01	1.0000	665.0	21.79%	665.0	21.79%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.876e-01	1.0000	704.0	23.07%	703.6	23.05%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.875e-01	1.0000	727.0	23.82%	726.9	23.82%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.872e-01	1.0000	774.0	25.36%	774.0	25.36%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.870e-01	1.0000	817.0	26.77%	816.1	26.74%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.867e-01	1.0000	871.0	28.54%	870.9	28.53%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.862e-01	1.0000	969.0	31.75%	968.2	31.72%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-6.861e-01	1.0000	999.0	32.73%	998.7	32.72%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.851e-01	1.0000	1180.0	38.66%	1179.4	38.64%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-6.829e-01	1.0000	1540.0	50.46%	1539.0	50.43%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-6.826e-01	1.0000	1577.0	51.67%	1576.0	51.64%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.811e-01	1.0000	1784.0	58.45%	1783.4	58.43%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-6.811e-01	1.0000	1785.0	58.49%	1784.6	58.47%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.810e-01	1.0000	1794.0	58.78%	1793.5	58.76%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.808e-01	1.0000	1826.0	59.83%	1825.8	59.82%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.667e-01	1.0000	2665.0	87.32%	2664.6	87.31%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.647e-01	1.0000	997.0	32.67%	997.1	32.67%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-6.647e-01	1.0000	1046.0	34.27%	1046.6	34.29%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.646e-01	1.0000	947.0	31.03%	947.1	31.03%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.646e-01	1.0000	926.0	30.34%	926.2	30.35%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-6.645e-01	1.0000	860.0	28.18%	860.6	28.20%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.644e-01	1.0000	839.0	27.49%	839.1	27.49%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.643e-01	1.0000	806.0	26.41%	806.6	26.43%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.642e-01	1.0000	780.0	25.56%	780.1	25.56%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.642e-01	1.0000	1287.0	42.17%	1287.1	42.17%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.641e-01	1.0000	1312.0	42.99%	1312.9	43.02%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.639e-01	1.0000	1364.0	44.69%	1364.1	44.70%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.637e-01	1.0000	1390.0	45.54%	1390.6	45.56%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.637e-01	1.0000	692.0	22.67%	692.0	22.67%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.633e-01	1.0000	1476.0	48.36%	1476.2	48.37%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.633e-01	1.0000	1477.0	48.39%	1477.2	48.40%
Tal1	CATCTG	1e0	-6.631e-01	1.0000	1511.0	49.51%	1511.2	49.52%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.627e-01	1.0000	1563.0	51.21%	1563.2	51.22%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.620e-01	1.0000	530.0	17.37%	530.9	17.39%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.610e-01	1.0000	467.0	15.30%	467.9	15.33%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.609e-01	1.0000	464.0	15.20%	464.1	15.21%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.606e-01	1.0000	450.0	14.74%	450.2	14.75%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.606e-01	1.0000	448.0	14.68%	448.0	14.68%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.606e-01	1.0000	446.0	14.61%	446.2	14.62%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.604e-01	1.0000	1827.0	59.86%	1827.5	59.88%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.596e-01	1.0000	1895.0	62.09%	1895.9	62.12%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.593e-01	1.0000	391.0	12.81%	391.0	12.81%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-6.591e-01	1.0000	383.0	12.55%	383.7	12.57%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.588e-01	1.0000	1959.0	64.19%	1959.8	64.21%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.581e-01	1.0000	352.0	11.53%	352.1	11.54%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-6.577e-01	1.0000	340.0	11.14%	340.9	11.17%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-6.565e-01	1.0000	307.0	10.06%	308.0	10.09%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-6.561e-01	1.0000	298.0	9.76%	298.0	9.77%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.554e-01	1.0000	282.0	9.24%	282.9	9.27%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.550e-01	1.0000	275.0	9.01%	275.0	9.01%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.548e-01	1.0000	2195.0	71.92%	2195.1	71.92%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-6.547e-01	1.0000	269.0	8.81%	269.9	8.84%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.546e-01	1.0000	267.0	8.75%	267.1	8.75%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-6.545e-01	1.0000	2209.0	72.38%	2209.0	72.38%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.534e-01	1.0000	245.0	8.03%	245.2	8.03%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-6.532e-01	1.0000	243.0	7.96%	243.1	7.96%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.531e-01	1.0000	240.0	7.86%	240.1	7.87%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.516e-01	1.0000	219.0	7.18%	219.1	7.18%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.509e-01	1.0000	209.0	6.85%	209.9	6.88%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.494e-01	1.0000	192.0	6.29%	192.7	6.31%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.492e-01	1.0000	2414.0	79.10%	2414.9	79.12%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.489e-01	1.0000	186.0	6.09%	186.9	6.12%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-6.482e-01	1.0000	2909.0	95.31%	2908.6	95.30%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.476e-01	1.0000	2458.0	80.54%	2458.8	80.56%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.469e-01	1.0000	167.0	5.47%	167.0	5.47%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.461e-01	1.0000	160.0	5.24%	160.2	5.25%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.443e-01	1.0000	1165.0	38.17%	1166.5	38.22%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.443e-01	1.0000	1288.0	42.20%	1289.8	42.26%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-6.443e-01	1.0000	1132.0	37.09%	1133.8	37.15%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.442e-01	1.0000	1119.0	36.66%	1120.3	36.71%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-6.442e-01	1.0000	1349.0	44.20%	1350.2	44.24%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-6.436e-01	1.0000	965.0	31.62%	966.9	31.68%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.433e-01	1.0000	930.0	30.47%	931.6	30.52%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.432e-01	1.0000	139.0	4.55%	139.9	4.58%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.432e-01	1.0000	139.0	4.55%	139.1	4.56%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-6.430e-01	1.0000	888.0	29.10%	889.2	29.14%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.430e-01	1.0000	888.0	29.10%	889.5	29.15%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.428e-01	1.0000	136.0	4.46%	136.1	4.46%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.418e-01	1.0000	789.0	25.85%	790.3	25.90%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.413e-01	1.0000	1760.0	57.67%	1761.1	57.70%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.412e-01	1.0000	1770.0	57.99%	1771.9	58.06%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.398e-01	1.0000	664.0	21.76%	665.7	21.81%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.388e-01	1.0000	114.0	3.74%	114.1	3.74%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.388e-01	1.0000	114.0	3.74%	114.2	3.74%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.388e-01	1.0000	620.0	20.31%	621.9	20.38%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.380e-01	1.0000	110.0	3.60%	110.2	3.61%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.380e-01	1.0000	110.0	3.60%	110.1	3.61%
SeqBias: TA-repeat	TATATATATA	1e0	-6.366e-01	1.0000	2057.0	67.40%	2058.7	67.45%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.364e-01	1.0000	534.0	17.50%	535.9	17.56%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.359e-01	1.0000	101.0	3.31%	101.0	3.31%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-6.359e-01	1.0000	518.0	16.97%	520.0	17.04%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.351e-01	1.0000	98.0	3.21%	98.1	3.21%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.344e-01	1.0000	95.0	3.11%	95.2	3.12%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.343e-01	1.0000	475.0	15.56%	476.1	15.60%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-6.339e-01	1.0000	465.0	15.24%	466.4	15.28%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.338e-01	1.0000	93.0	3.05%	93.0	3.05%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.336e-01	1.0000	2182.0	71.49%	2183.4	71.54%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.292e-01	1.0000	374.0	12.25%	375.2	12.29%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-6.290e-01	1.0000	78.0	2.56%	78.1	2.56%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.287e-01	1.0000	365.0	11.96%	366.9	12.02%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-6.270e-01	1.0000	2779.0	91.06%	2779.7	91.08%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-6.248e-01	1.0000	1385.0	45.38%	1387.3	45.46%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.248e-01	1.0000	1395.0	45.71%	1397.1	45.78%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.245e-01	1.0000	1152.0	37.75%	1154.8	37.84%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.238e-01	1.0000	1580.0	51.77%	1582.9	51.86%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-6.226e-01	1.0000	935.0	30.64%	937.1	30.70%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.225e-01	1.0000	286.0	9.37%	287.1	9.41%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-6.221e-01	1.0000	900.0	29.49%	902.2	29.56%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.215e-01	1.0000	2821.0	92.43%	2821.0	92.43%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.214e-01	1.0000	857.0	28.08%	859.2	28.15%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.213e-01	1.0000	853.0	27.95%	855.1	28.02%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.208e-01	1.0000	827.0	27.10%	829.4	27.17%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-6.190e-01	1.0000	1937.0	63.47%	1939.9	63.56%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.187e-01	1.0000	56.0	1.83%	56.0	1.84%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.140e-01	1.0000	49.0	1.61%	49.1	1.61%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.043e-01	1.0000	38.0	1.25%	38.0	1.25%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.041e-01	1.0000	415.0	13.60%	417.2	13.67%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.027e-01	1.0000	1772.0	58.06%	1775.1	58.16%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.970e-01	1.0000	32.0	1.05%	32.0	1.05%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.965e-01	1.0000	333.0	10.91%	335.7	11.00%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.937e-01	1.0000	654.0	21.43%	657.0	21.53%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-5.922e-01	1.0000	621.0	20.35%	624.1	20.45%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.904e-01	1.0000	116.0	3.80%	117.1	3.84%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.879e-01	1.0000	545.0	17.86%	548.1	17.96%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.872e-01	1.0000	1283.0	42.04%	1287.9	42.20%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.840e-01	1.0000	101.0	3.31%	102.1	3.35%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.840e-01	1.0000	101.0	3.31%	102.1	3.35%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.814e-01	1.0000	1904.0	62.39%	1908.9	62.55%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.790e-01	1.0000	22.0	0.72%	22.0	0.72%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.773e-01	1.0000	211.0	6.91%	213.2	6.98%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-5.766e-01	1.0000	21.0	0.69%	21.0	0.69%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.760e-01	1.0000	86.0	2.82%	88.0	2.88%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.732e-01	1.0000	681.0	22.31%	685.2	22.45%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-5.730e-01	1.0000	374.0	12.25%	377.1	12.36%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.693e-01	1.0000	1352.0	44.30%	1357.1	44.47%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-5.690e-01	1.0000	1533.0	50.23%	1538.0	50.39%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.653e-01	1.0000	554.0	18.15%	558.9	18.31%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-5.547e-01	1.0000	727.0	23.82%	732.1	23.99%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.516e-01	1.0000	2196.0	71.95%	2201.8	72.14%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-5.496e-01	1.0000	1156.0	37.88%	1162.2	38.08%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.493e-01	1.0000	639.0	20.94%	644.0	21.10%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.490e-01	1.0000	1729.0	56.65%	1735.2	56.85%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.484e-01	1.0000	1765.0	57.83%	1771.2	58.03%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-5.473e-01	1.0000	1042.0	34.14%	1048.1	34.34%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-5.440e-01	1.0000	3003.0	98.39%	3004.0	98.43%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-5.429e-01	1.0000	12.0	0.39%	12.0	0.39%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.320e-01	1.0000	453.0	14.84%	458.0	15.01%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-5.301e-01	1.0000	10.0	0.33%	10.0	0.33%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.235e-01	1.0000	882.0	28.90%	889.0	29.13%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.193e-01	1.0000	798.0	26.15%	805.0	26.38%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-5.167e-01	1.0000	2975.0	97.48%	2976.5	97.53%
SeqBias: CG bias	SSSSSSSSSS	1e0	-5.093e-01	1.0000	3021.0	98.98%	3021.4	99.00%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-4.682e-01	1.0000	19.0	0.62%	21.0	0.69%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.629e-01	1.0000	119.0	3.90%	123.0	4.03%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-4.570e-01	1.0000	70.0	2.29%	73.1	2.39%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-3.748e-01	1.0000	3050.0	99.93%	3050.0	99.93%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	0.000e+00	1.0000	3052.0	100.00%	3052.0	100.00%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	0.000e+00	1.0000	3052.0	100.00%	3052.0	100.00%
SeqBias: G/A bias	RRRRRRRRRR	1e0	0.000e+00	1.0000	3052.0	100.00%	3052.0	100.00%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	0.000e+00	1.0000	3052.0	100.00%	3052.0	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	3052.0	100.00%	3052.0	100.00%