Information for 5-CTAAATCTAG (Motif 8)


Reverse Opposite:

p-value:1e0
log p-value:-1.934e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets581.3 +/- 279.8bp
Average Position of motif in Background618.2 +/- 292.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RLM1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CTAAATCTAG
CTAAAAATAG

MA0052.2_MEF2A/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTAAATCTAG---
AGCTAAAAATAGCAT

MA0266.1_ABF2/Jaspar

Match Rank:3
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CTAAATCTAG--
-----TCTAGAN

MA0369.1_RLM1/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CTAAATCTAG----
AGTTCTATAAATAGATCC

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTAAATCTAG
CCATATATGG

AGP1(GATA)/Nicotiana tabacum/AthaMap

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTAAATCTAG
TCAGATCTAC

SMP1/Literature(Harbison)/Yeast

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CTAAATCTAG
ACTACTAAAAATAG

SMP1(MacIsaac)/Yeast

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CTAAATCTAG
ACTACTAAAAATAG

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTAAATCTAG-
DCYAAAAATAGM

MA0497.1_MEF2C/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTAAATCTAG--
ATGCTAAAAATAGAA