Information for 3-GGTGATCTAG (Motif 6)


Reverse Opposite:

p-value:1e0
log p-value:-1.934e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets565.7 +/- 234.2bp
Average Position of motif in Background488.0 +/- 218.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GGTGATCTAG
--TGATCTG-

MA0266.1_ABF2/Jaspar

Match Rank:2
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:GGTGATCTAG--
-----TCTAGAN

MA0301.1_GAT3/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGTGATCTAG-
--AGATCTACA

PB0090.1_Zbtb12_1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGTGATCTAG--------
-NNGATCTAGAACCTNNN

MA0451.1_kni/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGTGATCTAG---
-GTGCTCTANTTT

MA0389.1_SRD1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGTGATCTAG
--AGATCTAC

kni/dmmpmm(Noyes)/fly

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGTGATCTAG---
-GTGCTCTAGTTT

MA0160.1_NR4A2/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGTGATCTAG
-GTGACCTT-

MA0293.1_ECM23/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGTGATCTAG
NNNAGATCTNN

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGATCTAG--
NNANTGGTGGTCTTNNN