Information for 4-AGGGGGCAGTGG (Motif 5)


Reverse Opposite:

p-value:1e-1
log p-value:-2.773e+00
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets563.8 +/- 327.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGGGGGCAGTGG
-NGGGGCGGTG-

MA0123.1_abi4/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGGGGGCAGTGG
-GGGGGCACCG-

RCS1/RCS1_H2O2Hi/35-RCS1(Harbison)/Yeast

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGGGGGCAGTGG
-GGGTGCANT--

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AGGGGGCAGTGG-
NNNAAGGGGGCGGGNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGGGGGCAGTGG-
GGCGAGGGGTCAAGGGC

MSN4(MacIsaac)/Yeast

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGGGGCAGTGG
AAGGGGG------

MA0342.1_MSN4/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGGGGCAGTGG
AGGGG-------

MA0155.1_INSM1/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGGGGGCAGTGG
TGTCAGGGGGCG----

MA0366.1_RGM1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGGGGCAGTGG
AGGGG-------

MA0162.2_EGR1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGGGGGCAGTGG
GGCGGGGGCGGGGG