Information for 3-CCCCACCCACGA (Motif 4)


Reverse Opposite:

p-value:1e-1
log p-value:-2.773e+00
Information Content per bp:1.766
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets405.8 +/- 111.7bp
Average Position of motif in Background391.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCCCACCCACGA-
-YCCGCCCACGCN

MA0472.1_EGR2/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCCCACCCACGA--
CCCCCGCCCACGCAC

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCCACCCACGA
GGACCACCCACG-

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CCCCACCCACGA-
---CRCCCACGCA

MA0436.1_YPR022C/Jaspar

Match Rank:5
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CCCCACCCACGA
----CCCCACG-

MA0162.2_EGR1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCCCACCCACGA-
CCCCCGCCCCCGCC

MA0599.1_KLF5/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCCCACCCACGA
GCCCCGCCCC---

MA0493.1_Klf1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCCCACCCACGA
GGCCACACCCA---

MA0039.2_Klf4/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCCCACCCACGA
GCCCCACCCA---

Deaf1/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:CCCCACCCACGA-
-------CACGAA