Information for 2-CCACAGRGGGGG (Motif 2)


Reverse Opposite:

p-value:1e-1
log p-value:-3.079e+00
Information Content per bp:1.881
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets474.2 +/- 277.9bp
Average Position of motif in Background479.8 +/- 242.8bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCACAGRGGGGG-
-CACAGCAGGGGG

MA0332.1_MET28/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCACAGRGGGGG
CCACAG------

MET28(MacIsaac)/Yeast

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCACAGRGGGGG
CCACAG------

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCACAGRGGGGG
CACCCCCGGGGGGG

opa/dmmpmm(Noyes)/fly

Match Rank:5
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CCACAGRGGGGG---
---CAGCGGGGGGTC

MA0341.1_MSN2/Jaspar

Match Rank:6
Score:0.66
Offset:7
Orientation:forward strand
Alignment:CCACAGRGGGGG
-------AGGGG

MA0456.1_opa/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCACAGRGGGGG---
---CAGCGGGGGGTC

MSN2/MSN2_H2O2Hi/1-MSN2(Harbison)/Yeast

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCACAGRGGGGG
---AAGGGGCGG

MA0002.2_RUNX1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGRGGGGG
AAACCACAGAN----

MA0342.1_MSN4/Jaspar

Match Rank:10
Score:0.63
Offset:7
Orientation:forward strand
Alignment:CCACAGRGGGGG
-------AGGGG