Information for 1-GAGTGGACGGAC (Motif 1)


Reverse Opposite:

p-value:1e-1
log p-value:-3.467e+00
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets509.0 +/- 286.3bp
Average Position of motif in Background538.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAGTGGACGGAC
NGCGTGGGCGGR-

MA0443.1_btd/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGTGGACGGAC
-AGGGGGCGGA-

MA0130.1_ZNF354C/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGTGGACGGAC
--GTGGAT----

PB0010.1_Egr1_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGGACGGAC
ANTGCGGGGGCGGN-

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGGACGGAC----
CCCTNCTGTACGGACGNNA

MA0586.1_SPL14/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGGACGGAC----
CCCTNCTGTACGGACGNNA

z/dmmpmm(Down)/fly

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGTGGACGGAC
TGAGTG-------

MA0472.1_EGR2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGGACGGAC-
GTGCGTGGGCGGGNG

MA0122.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGTGGACGGAC
TTAAGTGGA-----

z/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGTGGACGGAC
TGAGTG-------