Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 7603)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 7568)	% of Background Sequences with Motif
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.211e+00	1.0000	92.0	1.21%	84.0	1.11%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.023e+00	1.0000	3380.0	44.60%	3357.6	44.31%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.890e-01	1.0000	2108.0	27.82%	2090.0	27.58%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-9.403e-01	1.0000	3369.0	44.46%	3351.7	44.23%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-9.364e-01	1.0000	1382.0	18.24%	1369.0	18.07%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.123e-01	1.0000	921.0	12.15%	910.2	12.01%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-9.086e-01	1.0000	3356.0	44.29%	3340.2	44.08%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.861e-01	1.0000	2641.0	34.85%	2628.0	34.68%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-8.822e-01	1.0000	1634.0	21.56%	1622.9	21.42%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-8.798e-01	1.0000	3080.0	40.64%	3066.3	40.46%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-8.768e-01	1.0000	1761.0	23.24%	1749.6	23.09%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-8.715e-01	1.0000	2563.0	33.82%	2550.4	33.66%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.661e-01	1.0000	4675.0	61.69%	4662.5	61.53%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-8.652e-01	1.0000	2997.0	39.55%	2984.6	39.39%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.635e-01	1.0000	3179.0	41.95%	3166.8	41.79%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.622e-01	1.0000	5360.0	70.73%	5348.8	70.58%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-8.568e-01	1.0000	2490.0	32.86%	2478.4	32.71%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-8.468e-01	1.0000	413.0	5.45%	407.9	5.38%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-8.328e-01	1.0000	3263.0	43.06%	3252.9	42.93%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-8.324e-01	1.0000	2093.0	27.62%	2083.9	27.50%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.314e-01	1.0000	3684.0	48.61%	3673.1	48.47%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.265e-01	1.0000	1178.0	15.54%	1170.3	15.44%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.262e-01	1.0000	551.0	7.27%	545.8	7.20%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.212e-01	1.0000	370.0	4.88%	365.8	4.83%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-8.195e-01	1.0000	613.0	8.09%	607.0	8.01%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.188e-01	1.0000	5629.0	74.28%	5620.7	74.17%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.173e-01	1.0000	3438.0	45.37%	3428.3	45.24%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.097e-01	1.0000	725.0	9.57%	719.9	9.50%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.079e-01	1.0000	2652.0	35.00%	2643.9	34.89%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.075e-01	1.0000	1722.0	22.72%	1714.2	22.62%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.023e-01	1.0000	3762.0	49.64%	3753.0	49.53%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-8.023e-01	1.0000	5626.0	74.24%	5618.9	74.15%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-7.976e-01	1.0000	6666.0	87.97%	6660.5	87.89%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-7.940e-01	1.0000	5048.0	66.61%	5041.0	66.52%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-7.911e-01	1.0000	4715.0	62.22%	4707.6	62.12%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-7.894e-01	1.0000	1768.0	23.33%	1761.9	23.25%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.888e-01	1.0000	362.0	4.78%	358.9	4.74%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.836e-01	1.0000	2125.0	28.04%	2118.0	27.95%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-7.745e-01	1.0000	4200.0	55.42%	4193.6	55.34%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-7.740e-01	1.0000	3691.0	48.71%	3684.8	48.63%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.740e-01	1.0000	3825.0	50.48%	3818.8	50.39%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-7.736e-01	1.0000	5865.0	77.40%	5859.6	77.32%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.727e-01	1.0000	1774.0	23.41%	1768.7	23.34%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-7.712e-01	1.0000	1874.0	24.73%	1868.1	24.65%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-7.693e-01	1.0000	1108.0	14.62%	1103.9	14.57%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.684e-01	1.0000	2089.0	27.57%	2084.0	27.50%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.629e-01	1.0000	1370.0	18.08%	1365.8	18.02%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.611e-01	1.0000	3155.0	41.63%	3149.7	41.56%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-7.601e-01	1.0000	3950.0	52.12%	3944.9	52.06%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.593e-01	1.0000	6020.0	79.44%	6015.4	79.38%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.580e-01	1.0000	815.0	10.75%	811.0	10.70%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.553e-01	1.0000	1853.0	24.45%	1848.9	24.40%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-7.546e-01	1.0000	378.0	4.99%	376.0	4.96%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-7.546e-01	1.0000	919.0	12.13%	915.9	12.09%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.535e-01	1.0000	2019.0	26.64%	2014.9	26.59%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.523e-01	1.0000	6580.0	86.83%	6576.8	86.79%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-7.513e-01	1.0000	2274.0	30.01%	2269.7	29.95%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.505e-01	1.0000	2391.0	31.55%	2386.9	31.50%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.503e-01	1.0000	1084.0	14.30%	1080.6	14.26%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-7.495e-01	1.0000	1119.0	14.77%	1115.2	14.72%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-7.487e-01	1.0000	1160.0	15.31%	1156.3	15.26%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.484e-01	1.0000	471.0	6.22%	468.2	6.18%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.472e-01	1.0000	3133.0	41.34%	3128.2	41.28%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.470e-01	1.0000	3203.0	42.27%	3198.0	42.20%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-7.466e-01	1.0000	6313.0	83.31%	6309.7	83.26%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-7.452e-01	1.0000	7049.0	93.02%	7046.6	92.99%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.437e-01	1.0000	7446.0	98.26%	7445.0	98.24%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-7.426e-01	1.0000	1545.0	20.39%	1541.8	20.35%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.416e-01	1.0000	620.0	8.18%	617.1	8.14%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.389e-01	1.0000	5670.0	74.82%	5666.7	74.78%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-7.372e-01	1.0000	5429.0	71.64%	5425.9	71.60%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.366e-01	1.0000	2248.0	29.66%	2244.6	29.62%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.333e-01	1.0000	936.0	12.35%	933.2	12.31%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.333e-01	1.0000	938.0	12.38%	935.8	12.35%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-7.330e-01	1.0000	3427.0	45.22%	3423.9	45.18%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.328e-01	1.0000	3989.0	52.64%	3985.5	52.59%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.328e-01	1.0000	3620.0	47.77%	3616.5	47.72%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-7.328e-01	1.0000	3837.0	50.63%	3833.1	50.58%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-7.318e-01	1.0000	1022.0	13.49%	1019.5	13.45%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.283e-01	1.0000	1282.0	16.92%	1279.9	16.89%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-7.278e-01	1.0000	6252.0	82.50%	6249.8	82.47%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-7.260e-01	1.0000	318.0	4.20%	316.1	4.17%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-7.256e-01	1.0000	1574.0	20.77%	1571.4	20.74%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-7.240e-01	1.0000	362.0	4.78%	361.0	4.76%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-7.234e-01	1.0000	5657.0	74.65%	5654.9	74.62%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-7.231e-01	1.0000	1975.0	26.06%	1972.9	26.03%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-7.214e-01	1.0000	2399.0	31.66%	2396.1	31.62%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-7.201e-01	1.0000	7098.0	93.67%	7096.7	93.65%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-7.200e-01	1.0000	2983.0	39.36%	2980.9	39.34%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.197e-01	1.0000	3276.0	43.23%	3273.8	43.20%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.196e-01	1.0000	4215.0	55.62%	4212.1	55.58%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-7.196e-01	1.0000	3392.0	44.76%	3390.0	44.73%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-7.195e-01	1.0000	3429.0	45.25%	3426.4	45.21%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-7.195e-01	1.0000	4011.0	52.93%	4008.2	52.89%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.195e-01	1.0000	3577.0	47.20%	3574.4	47.17%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-7.194e-01	1.0000	3630.0	47.90%	3627.4	47.87%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-7.194e-01	1.0000	3913.0	51.64%	3910.3	51.60%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-7.187e-01	1.0000	539.0	7.11%	537.3	7.09%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.184e-01	1.0000	551.0	7.27%	549.1	7.25%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.162e-01	1.0000	671.0	8.85%	669.9	8.84%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.123e-01	1.0000	1019.0	13.45%	1017.8	13.43%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.117e-01	1.0000	1104.0	14.57%	1102.0	14.54%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-7.116e-01	1.0000	1114.0	14.70%	1112.1	14.67%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-7.114e-01	1.0000	6432.0	84.88%	6430.7	84.86%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.110e-01	1.0000	1216.0	16.05%	1214.8	16.03%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.106e-01	1.0000	1274.0	16.81%	1272.7	16.80%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-7.106e-01	1.0000	1288.0	17.00%	1287.0	16.98%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-7.103e-01	1.0000	1337.0	17.64%	1335.0	17.62%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.099e-01	1.0000	1417.0	18.70%	1415.8	18.68%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.094e-01	1.0000	1528.0	20.16%	1526.9	20.15%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.092e-01	1.0000	5999.0	79.16%	5997.0	79.14%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-7.091e-01	1.0000	1615.0	21.31%	1613.7	21.29%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-7.078e-01	1.0000	2066.0	27.26%	2064.6	27.24%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-7.076e-01	1.0000	2175.0	28.70%	2173.8	28.69%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-7.075e-01	1.0000	2215.0	29.23%	2213.9	29.21%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-7.073e-01	1.0000	2301.0	30.36%	2299.9	30.35%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.073e-01	1.0000	5260.0	69.41%	5258.4	69.39%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-7.071e-01	1.0000	5158.0	68.07%	5156.4	68.04%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-7.070e-01	1.0000	2493.0	32.90%	2491.7	32.88%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.070e-01	1.0000	2502.0	33.02%	2500.9	33.00%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.069e-01	1.0000	2629.0	34.69%	2627.2	34.67%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-7.068e-01	1.0000	2702.0	35.66%	2700.7	35.64%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.066e-01	1.0000	4657.0	61.45%	4655.2	61.43%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.064e-01	1.0000	3199.0	42.21%	3197.8	42.20%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-7.063e-01	1.0000	3425.0	45.20%	3423.5	45.18%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.931e-01	1.0000	4950.0	65.32%	4949.4	65.31%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.931e-01	1.0000	4733.0	62.46%	4732.9	62.46%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-6.931e-01	1.0000	4361.0	57.55%	4360.4	57.54%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.931e-01	1.0000	1859.0	24.53%	1858.8	24.53%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-6.931e-01	1.0000	3650.0	48.17%	3649.3	48.16%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.931e-01	1.0000	4234.0	55.87%	4233.6	55.87%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.931e-01	1.0000	1627.0	21.47%	1626.9	21.47%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-6.931e-01	1.0000	4110.0	54.24%	4109.9	54.23%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.931e-01	1.0000	4635.0	61.16%	4634.7	61.16%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.931e-01	1.0000	2399.0	31.66%	2398.4	31.65%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-6.931e-01	1.0000	6898.0	91.03%	6897.0	91.01%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.931e-01	1.0000	3396.0	44.81%	3395.4	44.81%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.931e-01	1.0000	1235.0	16.30%	1234.5	16.29%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.931e-01	1.0000	648.0	8.55%	647.9	8.55%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.931e-01	1.0000	3290.0	43.42%	3289.9	43.41%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-6.931e-01	1.0000	556.0	7.34%	555.8	7.33%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.931e-01	1.0000	711.0	9.38%	710.9	9.38%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.931e-01	1.0000	3668.0	48.40%	3667.1	48.39%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.931e-01	1.0000	4428.0	58.43%	4427.2	58.42%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-6.931e-01	1.0000	1144.0	15.10%	1143.7	15.09%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.931e-01	1.0000	764.0	10.08%	763.8	10.08%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.931e-01	1.0000	5353.0	70.64%	5352.6	70.63%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.931e-01	1.0000	971.0	12.81%	970.1	12.80%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-6.931e-01	1.0000	614.0	8.10%	613.9	8.10%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.931e-01	1.0000	6650.0	87.75%	6649.3	87.75%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-6.931e-01	1.0000	6283.0	82.91%	6283.0	82.91%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.931e-01	1.0000	3463.0	45.70%	3462.9	45.70%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.931e-01	1.0000	456.0	6.02%	455.8	6.02%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.931e-01	1.0000	1782.0	23.52%	1781.8	23.51%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.931e-01	1.0000	1060.0	13.99%	1059.8	13.99%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.931e-01	1.0000	1163.0	15.35%	1163.0	15.35%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.931e-01	1.0000	986.0	13.01%	985.7	13.01%
SeqBias: TA-repeat	TATATATATA	1e0	-6.931e-01	1.0000	6792.0	89.63%	6791.6	89.62%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.931e-01	1.0000	1168.0	15.41%	1167.9	15.41%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.931e-01	1.0000	523.0	6.90%	523.0	6.90%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.931e-01	1.0000	6917.0	91.28%	6916.0	91.26%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-6.931e-01	1.0000	812.0	10.72%	811.7	10.71%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.931e-01	1.0000	543.0	7.17%	542.9	7.16%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.931e-01	1.0000	443.0	5.85%	442.7	5.84%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.931e-01	1.0000	419.0	5.53%	418.9	5.53%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.931e-01	1.0000	401.0	5.29%	400.8	5.29%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.931e-01	1.0000	512.0	6.76%	512.0	6.76%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.931e-01	1.0000	158.0	2.08%	158.0	2.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.931e-01	1.0000	133.0	1.76%	133.0	1.75%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.931e-01	1.0000	7428.0	98.02%	7428.0	98.02%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.931e-01	1.0000	7431.0	98.06%	7430.8	98.06%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.931e-01	1.0000	7460.0	98.44%	7459.6	98.44%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-6.931e-01	1.0000	84.0	1.11%	83.9	1.11%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.931e-01	1.0000	58.0	0.77%	58.0	0.76%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-6.931e-01	1.0000	7535.0	99.43%	7535.0	99.43%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-6.931e-01	1.0000	7545.0	99.56%	7544.9	99.56%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-6.931e-01	1.0000	20.0	0.26%	20.0	0.26%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-6.931e-01	1.0000	35.0	0.46%	34.0	0.45%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-6.802e-01	1.0000	4140.0	54.63%	4140.7	54.64%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.802e-01	1.0000	4147.0	54.72%	4147.3	54.73%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-6.802e-01	1.0000	4196.0	55.37%	4196.4	55.38%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.802e-01	1.0000	4244.0	56.00%	4244.5	56.01%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.800e-01	1.0000	4565.0	60.24%	4566.0	60.25%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.797e-01	1.0000	4850.0	64.00%	4850.3	64.01%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.797e-01	1.0000	2660.0	35.10%	2660.9	35.11%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.795e-01	1.0000	2550.0	33.65%	2551.0	33.66%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.791e-01	1.0000	5286.0	69.75%	5287.0	69.77%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.791e-01	1.0000	2265.0	29.89%	2265.9	29.90%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.790e-01	1.0000	5364.0	70.78%	5364.1	70.79%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-6.785e-01	1.0000	5620.0	74.16%	5620.3	74.17%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.782e-01	1.0000	5727.0	75.57%	5727.6	75.58%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.771e-01	1.0000	6051.0	79.85%	6051.1	79.85%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-6.770e-01	1.0000	1508.0	19.90%	1508.0	19.90%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.768e-01	1.0000	6121.0	80.77%	6122.0	80.79%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.766e-01	1.0000	6178.0	81.53%	6178.2	81.53%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.762e-01	1.0000	1313.0	17.33%	1313.7	17.34%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.746e-01	1.0000	1058.0	13.96%	1058.0	13.96%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.743e-01	1.0000	1011.0	13.34%	1011.9	13.35%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.731e-01	1.0000	878.0	11.59%	878.1	11.59%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.727e-01	1.0000	839.0	11.07%	839.9	11.08%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.712e-01	1.0000	712.0	9.40%	712.3	9.40%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.708e-01	1.0000	686.0	9.05%	686.1	9.05%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.676e-01	1.0000	3822.0	50.44%	3823.1	50.45%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.675e-01	1.0000	3674.0	48.48%	3675.6	48.50%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.675e-01	1.0000	3956.0	52.20%	3957.3	52.22%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-6.674e-01	1.0000	4182.0	55.19%	4183.4	55.20%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.673e-01	1.0000	495.0	6.53%	495.0	6.53%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.672e-01	1.0000	3176.0	41.91%	3177.9	41.94%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.672e-01	1.0000	3153.0	41.61%	3154.6	41.63%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-6.670e-01	1.0000	4547.0	60.00%	4548.6	60.02%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.670e-01	1.0000	2996.0	39.54%	2997.7	39.56%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-6.669e-01	1.0000	4636.0	61.18%	4637.4	61.20%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.666e-01	1.0000	2759.0	36.41%	2760.0	36.42%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.665e-01	1.0000	2726.0	35.97%	2727.1	35.99%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.664e-01	1.0000	2693.0	35.54%	2694.3	35.55%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.664e-01	1.0000	2675.0	35.30%	2676.9	35.32%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.663e-01	1.0000	2620.0	34.57%	2621.9	34.60%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.655e-01	1.0000	5235.0	69.08%	5236.1	69.10%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.649e-01	1.0000	5411.0	71.40%	5412.1	71.42%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-6.637e-01	1.0000	1911.0	25.22%	1913.0	25.24%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-6.637e-01	1.0000	5682.0	74.98%	5683.6	75.00%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.635e-01	1.0000	368.0	4.86%	368.1	4.86%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-6.633e-01	1.0000	1833.0	24.19%	1834.3	24.21%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.632e-01	1.0000	1802.0	23.78%	1803.7	23.80%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.630e-01	1.0000	1779.0	23.48%	1780.9	23.50%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.615e-01	1.0000	1547.0	20.41%	1548.6	20.43%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-6.606e-01	1.0000	303.0	4.00%	303.1	4.00%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.600e-01	1.0000	6216.0	82.03%	6217.1	82.04%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.595e-01	1.0000	1315.0	17.35%	1316.0	17.37%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-6.578e-01	1.0000	1162.0	15.33%	1163.9	15.36%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.569e-01	1.0000	241.0	3.18%	241.1	3.18%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.560e-01	1.0000	1027.0	13.55%	1028.2	13.57%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.550e-01	1.0000	217.0	2.86%	217.0	2.86%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.550e-01	1.0000	3754.0	49.54%	3756.6	49.57%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.550e-01	1.0000	3907.0	51.56%	3909.5	51.59%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.550e-01	1.0000	3944.0	52.05%	3946.6	52.08%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.549e-01	1.0000	3484.0	45.98%	3486.1	46.00%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.548e-01	1.0000	4179.0	55.15%	4181.1	55.17%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-6.542e-01	1.0000	4583.0	60.48%	4585.3	60.51%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.532e-01	1.0000	4935.0	65.12%	4937.9	65.16%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.531e-01	1.0000	4958.0	65.43%	4960.8	65.46%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.528e-01	1.0000	5046.0	66.59%	5048.3	66.62%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-6.526e-01	1.0000	2478.0	32.70%	2480.2	32.73%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.506e-01	1.0000	5485.0	72.38%	5487.5	72.41%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.504e-01	1.0000	5515.0	72.78%	5517.6	72.81%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.496e-01	1.0000	5639.0	74.41%	5641.7	74.45%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.483e-01	1.0000	5801.0	76.55%	5803.4	76.58%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.444e-01	1.0000	7028.0	92.74%	7029.9	92.77%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-6.427e-01	1.0000	1286.0	16.97%	1288.2	17.00%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.425e-01	1.0000	3536.0	46.66%	3539.5	46.71%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.423e-01	1.0000	3329.0	43.93%	3332.7	43.98%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-6.418e-01	1.0000	3110.0	41.04%	3113.2	41.08%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-6.417e-01	1.0000	1226.0	16.18%	1228.1	16.21%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-6.416e-01	1.0000	6359.0	83.91%	6361.8	83.95%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.408e-01	1.0000	4787.0	63.17%	4790.7	63.22%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-6.408e-01	1.0000	4791.0	63.22%	4794.4	63.27%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.406e-01	1.0000	465.0	6.14%	467.0	6.16%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.405e-01	1.0000	2696.0	35.58%	2699.9	35.63%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.389e-01	1.0000	6507.0	85.87%	6509.9	85.91%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.387e-01	1.0000	7148.0	94.33%	7149.9	94.35%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.379e-01	1.0000	2234.0	29.48%	2237.1	29.52%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.377e-01	1.0000	99.0	1.31%	99.1	1.31%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.366e-01	1.0000	2059.0	27.17%	2062.4	27.22%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-6.363e-01	1.0000	7484.0	98.76%	7484.9	98.77%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.348e-01	1.0000	5708.0	75.32%	5711.6	75.37%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.347e-01	1.0000	5719.0	75.47%	5722.6	75.52%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.343e-01	1.0000	878.0	11.59%	880.6	11.62%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.342e-01	1.0000	1810.0	23.88%	1813.1	23.93%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.325e-01	1.0000	7496.0	98.92%	7496.0	98.92%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.314e-01	1.0000	79.0	1.04%	79.0	1.04%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.274e-01	1.0000	4948.0	65.29%	4952.2	65.35%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.269e-01	1.0000	7296.0	96.28%	7297.8	96.30%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.253e-01	1.0000	2317.0	30.58%	2321.7	30.64%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.239e-01	1.0000	6408.0	84.56%	6411.9	84.61%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-6.197e-01	1.0000	55.0	0.73%	55.0	0.73%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-6.184e-01	1.0000	3745.0	49.42%	3750.2	49.49%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.182e-01	1.0000	3530.0	46.58%	3535.2	46.65%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.178e-01	1.0000	945.0	12.47%	948.1	12.51%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-6.178e-01	1.0000	3302.0	43.57%	3307.3	43.64%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.169e-01	1.0000	1602.0	21.14%	1606.0	21.19%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.167e-01	1.0000	1591.0	20.99%	1596.0	21.06%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.142e-01	1.0000	449.0	5.93%	451.8	5.96%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-6.142e-01	1.0000	5023.0	66.28%	5028.1	66.35%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.119e-01	1.0000	1344.0	17.74%	1348.1	17.79%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-6.101e-01	1.0000	5470.0	72.18%	5475.4	72.25%
Tal1	CATCTG	1e0	-6.091e-01	1.0000	5553.0	73.28%	5558.6	73.35%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-6.071e-01	1.0000	370.0	4.88%	372.1	4.91%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-6.051e-01	1.0000	4458.0	58.83%	4464.2	58.91%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.051e-01	1.0000	3110.0	41.04%	3116.3	41.12%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.040e-01	1.0000	1686.0	22.25%	1691.3	22.32%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-6.011e-01	1.0000	2477.0	32.69%	2483.1	32.77%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-6.000e-01	1.0000	311.0	4.10%	313.9	4.14%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-5.920e-01	1.0000	2892.0	38.16%	2899.2	38.26%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.903e-01	1.0000	458.0	6.04%	461.1	6.08%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.903e-01	1.0000	458.0	6.04%	461.1	6.08%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.859e-01	1.0000	6064.0	80.02%	6070.0	80.10%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.829e-01	1.0000	6617.0	87.32%	6622.7	87.39%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.790e-01	1.0000	2735.0	36.09%	2743.2	36.20%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.780e-01	1.0000	195.0	2.57%	197.0	2.60%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.778e-01	1.0000	2610.0	34.44%	2618.3	34.55%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-5.752e-01	1.0000	336.0	4.43%	339.1	4.47%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.744e-01	1.0000	1144.0	15.10%	1150.9	15.19%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.740e-01	1.0000	5976.0	78.86%	5983.8	78.96%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-5.725e-01	1.0000	1537.0	20.28%	1544.2	20.38%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-5.692e-01	1.0000	482.0	6.36%	486.1	6.41%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.668e-01	1.0000	686.0	9.05%	692.0	9.13%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.656e-01	1.0000	6254.0	82.53%	6261.4	82.63%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-5.629e-01	1.0000	2367.0	31.24%	2376.1	31.36%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.532e-01	1.0000	2531.0	33.40%	2541.1	33.53%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.526e-01	1.0000	1811.0	23.90%	1820.2	24.02%
SeqBias: CA-repeat	CACACACACA	1e0	-5.436e-01	1.0000	7566.0	99.84%	7566.0	99.84%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-5.436e-01	1.0000	7566.0	99.84%	7566.0	99.84%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-5.418e-01	1.0000	7270.0	95.94%	7274.1	95.99%
SeqBias: CG bias	SSSSSSSSSS	1e0	-5.029e-01	1.0000	7571.0	99.91%	7571.0	99.91%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-4.931e-01	1.0000	101.0	1.33%	105.0	1.39%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	0.000e+00	1.0000	7578.0	100.00%	7578.0	100.00%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	0.000e+00	1.0000	7578.0	100.00%	7578.0	100.00%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	0.000e+00	1.0000	7578.0	100.00%	7578.0	100.00%
SeqBias: G/A bias	RRRRRRRRRR	1e0	0.000e+00	1.0000	7578.0	100.00%	7578.0	100.00%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	0.000e+00	1.0000	7578.0	100.00%	7578.0	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	7578.0	100.00%	7578.0	100.00%