Information for 3-TGCGAGGGTA (Motif 7)


Reverse Opposite:

p-value:1e-1
log p-value:-2.410e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets1149.0 +/- 425.3bp
Average Position of motif in Background940.6 +/- 340.8bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGCGAGGGTA
TGCGTGGGYG

PB0167.1_Sox13_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGCGAGGGTA---
GTATTGGGTGGGTAATT

MA0363.1_REB1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGCGAGGGTA--
---CCGGGTAAC

MA0553.1_SMZ/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGCGAGGGTA
GTACGAGG---

SUT1?/SacCer-Promoters/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGCGAGGGTA
-GCGCGGGG-

CHA4(MacIsaac)/Yeast

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGCGAGGGTA
TGCGATGAG-

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGCGAGGGTA
NNCGTTGCTATGGNN

RAP1(MacIsaac)/Yeast

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGCGAGGGTA-
GTGTATGGGTGT

MA0111.1_Spz1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TGCGAGGGTA-----
----AGGGTAACAGC

PB0010.1_Egr1_1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGCGAGGGTA--
ANTGCGGGGGCGGN