Information for 2-TGGACCATAC (Motif 6)


Reverse Opposite:

p-value:1e-1
log p-value:-2.618e+00
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets1221.4 +/- 503.1bp
Average Position of motif in Background1440.4 +/- 314.1bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGGACCATAC
-GGACCCT--

NRG1(MacIsaac)/Yeast

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TGGACCATAC
-GGACCCT--

PB0137.1_Irf3_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGGACCATAC---
NNGCACCTTTCTCC

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGGACCATAC---
-GGACCACCCACG

MA0347.1_NRG1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TGGACCATAC-----
NGCNNTGGACCCTGATNNNG

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGGACCATAC--
NNATTGGACTTTNGNN

MET31(MacIsaac)/Yeast

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TGGACCATAC-
---GCCACACC

PCF5(TCP)/Oryza sativa/AthaMap

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGACCATAC
NNGGGACCAC--

MA0319.1_HSF1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGGACCATAC
ATGGAACA---

PCF/Arabidopsis-Promoters/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TGGACCATAC--
NHHARGCCCAWWWNN