Information for 1-GCGCACTCAT (Motif 5)


Reverse Opposite:

p-value:1e-1
log p-value:-3.421e+00
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets1020.7 +/- 558.3bp
Average Position of motif in Background690.2 +/- 381.9bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

z/dmmpmm(Down)/fly

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GCGCACTCAT
---CACTCA-

z/dmmpmm(Bigfoot)/fly

Match Rank:2
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GCGCACTCAT
---CACTCA-

z/dmmpmm(SeSiMCMC)/fly

Match Rank:3
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GCGCACTCAT
---CACTCAA

z/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCGCACTCAT
ANTCACTCAA

MA0255.1_z/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCGCACTCAT
ANTCACTCAA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCGCACTCAT
AASCACTCAA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCGCACTCAT-
AGCCACTCAAG

MA0530.1_CNC::maf-S/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCGCACTCAT-
ATNTGCNGAGTCATN

MA0291.1_DAL82/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCGCACTCAT
GCGCACATT-

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCGCACTCAT
AAGCACTTAA