Information for 2-GGGCCCTAGTGG (Motif 2)


Reverse Opposite:

p-value:1e-2
log p-value:-5.547e+00
Information Content per bp:1.970
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets826.1 +/- 554.3bp
Average Position of motif in Background148.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0163.1_PLAG1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGGCCCTAGTGG-
GGGGCCCAAGGGGG

NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGGCCCTAGTGG
GGACCCT-----

NRG1(MacIsaac)/Yeast

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGGCCCTAGTGG
GGACCCT-----

MA0139.1_CTCF/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GGGCCCTAGTGG---
TAGCGCCCCCTGGTGGCCA

MA0403.1_TBF1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGGCCCTAGTGG
-AACCCTAA---

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GGGCCCTAGTGG---
ANAGTGCCACCTGGTGGCCA

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------GGGCCCTAGTGG-
CNNBRGCGCCCCCTGSTGGC

MA0381.1_SKN7/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGGCCCTAGTGG
-GGCCAT-----

PCF2(TCP)/Oryza sativa/AthaMap

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGGCCCTAGTGG
GTGGGNCCCN----

MA0193.1_Lag1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGGCCCTAGTGG
-----TTGGTAG