Information for 1-TCGCACGA (Motif 11)


Reverse Opposite:

p-value:1e0
log p-value:-1.510e+00
Information Content per bp:1.530
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif12.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets886.6 +/- 502.7bp
Average Position of motif in Background745.9 +/- 446.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

byn/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TCGCACGA
AATTCGCAC--

Su(H)/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TCGCACGA
GTTCCCACG-

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TCGCACGA--
TBGCACGCAA

byn/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCGCACGA
TCGCACNT

CHA4(MacIsaac)/Yeast

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TCGCACGA
CTCATCGCA---

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCGCACGA--
--GCACGTAY

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCGCACGA--
--GCACGTNC

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCGCACGA
HTTTCCCASG-

PHO2/PHO2_H2O2Hi/[](Harbison)/Yeast

Match Rank:9
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TCGCACGA
CGCACCGCACG-

byn/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCGCACGA
TCGCACTT