Information for 5-GAGGCGAGGCGA (Motif 10)


Reverse Opposite:

p-value:1e0
log p-value:-2.213e+00
Information Content per bp:1.963
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets1101.0 +/- 506.5bp
Average Position of motif in Background777.4 +/- 629.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sp1(Zf)/Promoter/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCGAGGCGA
GGGGGCGGGGCC-

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGGCGAGGCGA-
CAAAGGCGTGGCCAG

PB0110.1_Bcl6b_2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGGCGAGGCGA-
NNTNAGGGGCGGNNNN

MA0516.1_SP2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGCGAGGCGA
GGGNGGGGGCGGGGC--

MA0079.3_SP1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCGAGGCGA
GGGGGCGGGGC--

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGGCGAGGCGA
DGGGYGKGGC--

SUT1?/SacCer-Promoters/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAGGCGAGGCGA
---GCGCGGGG-

PB0202.1_Zfp410_2/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GAGGCGAGGCGA--
NNTNNGGGGCGGNGNGN

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GAGGCGAGGCGA-
NAGANTGGCGGGGNGNA

MA0599.1_KLF5/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAGGCGAGGCGA
GGGGNGGGGC--