Information for 2-GACGCATA (Motif 9)


Reverse Opposite:

p-value:1e0
log p-value:-1.414e+00
Information Content per bp:1.947
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif15.0
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets503.4 +/- 317.8bp
Average Position of motif in Background468.5 +/- 332.6bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0295.1_FHL1/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GACGCATA
GACGCAAA

PB0108.1_Atf1_2/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----GACGCATA--
GAATGACGAATAAC

MBP1(MacIsaac)/Yeast

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GACGCATA
GACGCGT-

MBP1/MBP1_H2O2Hi/[](Harbison)/Yeast

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GACGCATA
GACGCGT-

MA0288.1_CUP9/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GACGCATA
TGACACATT

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GACGCATA---
-ATGMATATDC

ARG80(MacIsaac)/Yeast

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GACGCATA
AGACGC---

MA0271.1_ARG80/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GACGCATA
AGACGC---

RTG3(MacIsaac)/Yeast

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GACGCATA
ATGACTCA--

PB0179.1_Sp100_2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GACGCATA----
TCCGTCGCTTAAAAG