Information for 1-CGTGCGTA (Motif 8)


Reverse Opposite:

p-value:1e0
log p-value:-1.641e+00
Information Content per bp:1.530
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets639.8 +/- 256.0bp
Average Position of motif in Background654.3 +/- 238.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGTA
RTACGTGC---

PB0044.1_Mtf1_1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CGTGCGTA----
GGGCCGTGTGCAAAAA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGTA
GGACGTGC---

PB0027.1_Gmeb1_1/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CGTGCGTA-----
NNNTNGTACGTAANNNN

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGTA
TACGTGCV--

OsbHLH66(bHLH)/Oryza sativa/AthaMap

Match Rank:6
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CGTGCGTA
GAGCACGTGCGCA

vvl/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CGTGCGTA
--TGCATA

MA0254.1_vvl/Jaspar

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CGTGCGTA
--TGCATA

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCGTA
TTGCGTGCVA-

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGCGTA
GGGTACGTGC---