Information for 3-GACAAAACAG (Motif 5)


Reverse Opposite:

p-value:1e0
log p-value:-2.131e+00
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets486.8 +/- 298.2bp
Average Position of motif in Background447.0 +/- 295.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GACAAAACAG----
AACACCAAAACAAAGGA

pan/dmmpmm(Down)/fly

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GACAAAACAG
--AAAAACA-

ara/dmmpmm(Noyes_hd)/fly

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GACAAAACAG-
-AAATAACAAA

Mirr/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GACAAAACAG-
-AAAAAACAAA

ID1(C2H2(Zn))/Zea mays/AthaMap

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GACAAAACAG
AAAACGACAAA----

hb/dmmpmm(Noyes)/fly

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GACAAAACAG
ACNAAAAAAACA-

MA0233.1_mirr/Jaspar

Match Rank:7
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GACAAAACAG
----AAACA-

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GACAAAACAG-
AAACAGACAAAGGAAT

MA0210.1_ara/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GACAAAACAG
----TAACA-

PB0141.1_Isgf3g_2/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GACAAAACAG-----
-GCAAAACATTACTA