Information for 2-GTTAAACATTGA (Motif 2)


Reverse Opposite:

p-value:1e-1
log p-value:-2.411e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets635.9 +/- 287.1bp
Average Position of motif in Background867.9 +/- 71.5bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0153.1_HNF1B/Jaspar

Match Rank:1
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GTTAAACATTGA
GTTAAATATTAA

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:2
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GTTAAACATTGA
GGTTAAACATTAA

bin/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GTTAAACATTGA
--TAAACAAAGA

MA0031.1_FOXD1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GTTAAACATTGA
-GTAAACAT---

cad/dmmpmm(Down)/fly

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GTTAAACATTGA
---AAAAATTT-

MA0046.1_HNF1A/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTTAAACATTGA-
GGTTAATAATTAAC

Ct/dmmpmm(Noyes_hd)/fly

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTTAAACATTGA
GCTTGAACAA---

MA0218.1_ct/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTTAAACATTGA
-TTGAAC-----

MA0297.1_FKH2/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTTAAACATTGA
-GTAAACA----

MA0040.1_Foxq1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTAAACATTGA
AATAAACAATN-