Information for 3-CCCAGACCCTCT (Motif 12)


Reverse Opposite:

p-value:1e0
log p-value:-1.371e+00
Information Content per bp:1.934
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets516.0 +/- 320.1bp
Average Position of motif in Background558.6 +/- 281.1bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NRG1(MacIsaac)/Yeast

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCCAGACCCTCT
---GGACCCT--

NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCCAGACCCTCT
---GGACCCT--

RAP1(MacIsaac)/Yeast

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCCAGACCCTCT
ACACCCATACAC---

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCCAGACCCTCT
-CCAGACRSVB-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCCAGACCCTCT
-CCAGACAG---

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGACCCTCT
ATGCCAGACN----

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGACCCTCT
GGCCACACCCAN-

MA0493.1_Klf1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCCAGACCCTCT
GGCCACACCCA--

Sp1(Zf)/Promoter/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCCAGACCCTCT
GGCCCCGCCCCC--

ARG80(MacIsaac)/Yeast

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CCCAGACCCTCT
---AGACGC---