Information for 3-TTCGTGTA (Motif 10)


Reverse Opposite:

p-value:1e0
log p-value:-1.388e+00
Information Content per bp:1.530
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif16.0
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets461.1 +/- 262.2bp
Average Position of motif in Background466.9 +/- 256.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0401.1_SWI4/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TTCGTGTA
TTTCGCGT-

Deaf1/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TTCGTGTA
TTCGGG--

MA0185.1_Deaf1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TTCGTGTA
TTCGGG--

MA0318.1_HMRA2/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TTCGTGTA--
--CATGTAAT

SWI4(MacIsaac)/Yeast

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TTCGTGTA
TTTTCGCGT-

MA0411.1_UPC2/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TTCGTGTA
-TCGTATA

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTCGTGTA
ATTTCCTGTN

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTCGTGTA
CACTTCCTGT-

SWI6/SWI6_YPD/9-SWI4,9-SWI6(Harbison)/Yeast

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTCGTGTA
TTTCGCGT-

SWI4/SWI4_YPD/29-SWI4,29-SWI6(Harbison)/Yeast

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTCGTGTA
TTTCGCGTC