Information for 1-CCCACAGGAGGG (Motif 1)


Reverse Opposite:

p-value:1e-1
log p-value:-2.411e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets597.3 +/- 288.2bp
Average Position of motif in Background608.9 +/- 284.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCCACAGGAGGG--
--CACAGCAGGGGG

MA0332.1_MET28/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CCCACAGGAGGG
-CCACAG-----

MET28(MacIsaac)/Yeast

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CCCACAGGAGGG
-CCACAG-----

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCCACAGGAGGG--
CCACACAGCAGGAGA

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCACAGGAGGG
CACCCCCGGGGGGG

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCACAGGAGGG-
CCCCCCCGGGGGGGT

PB0103.1_Zic3_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCACAGGAGGG-
CCCCCCCGGGGGGGT

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCCACAGGAGGG
--AACAGGAAGT

MA0436.1_YPR022C/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCCACAGGAGGG
CCCCACG------

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCCACAGGAGGG--
CCACACAGCAGGAGA