Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4672)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 4672)	% of Background Sequences with Motif
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-9.126e-01	1.0000	2106.0	45.08%	2093.7	44.81%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.115e-01	1.0000	599.0	12.82%	590.3	12.63%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-9.032e-01	1.0000	1609.0	34.44%	1597.6	34.20%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.979e-01	1.0000	3435.0	73.52%	3424.9	73.31%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.906e-01	1.0000	3293.0	70.48%	3282.7	70.26%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-8.847e-01	1.0000	43.0	0.92%	41.0	0.88%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-8.774e-01	1.0000	1809.0	38.72%	1798.9	38.50%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-8.748e-01	1.0000	1267.0	27.12%	1257.8	26.92%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.691e-01	1.0000	204.0	4.37%	200.0	4.28%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.609e-01	1.0000	539.0	11.54%	532.8	11.40%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.576e-01	1.0000	2870.0	61.43%	2860.7	61.23%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-8.548e-01	1.0000	2008.0	42.98%	1998.7	42.78%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.538e-01	1.0000	2116.0	45.29%	2106.8	45.09%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.365e-01	1.0000	763.0	16.33%	756.3	16.19%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.361e-01	1.0000	1964.0	42.04%	1955.0	41.85%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-8.356e-01	1.0000	2017.0	43.17%	2008.2	42.98%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.281e-01	1.0000	881.0	18.86%	874.9	18.73%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.222e-01	1.0000	1614.0	34.55%	1606.1	34.38%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-8.193e-01	1.0000	1046.0	22.39%	1039.6	22.25%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-8.192e-01	1.0000	2888.0	61.82%	2880.5	61.66%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.155e-01	1.0000	2315.0	49.55%	2307.1	49.38%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-8.155e-01	1.0000	2346.0	50.21%	2338.7	50.06%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.121e-01	1.0000	447.0	9.57%	442.9	9.48%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-7.980e-01	1.0000	4090.0	87.54%	4085.8	87.45%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-7.956e-01	1.0000	1092.0	23.37%	1086.9	23.26%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.944e-01	1.0000	1127.0	24.12%	1121.9	24.01%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.893e-01	1.0000	1312.0	28.08%	1306.9	27.97%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-7.888e-01	1.0000	1336.0	28.60%	1331.0	28.49%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.875e-01	1.0000	385.0	8.24%	381.2	8.16%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.862e-01	1.0000	1464.0	31.34%	1458.6	31.22%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-7.853e-01	1.0000	3888.0	83.22%	3883.8	83.13%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.803e-01	1.0000	1967.0	42.10%	1961.7	41.99%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-7.798e-01	1.0000	2063.0	44.16%	2057.2	44.03%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-7.792e-01	1.0000	2247.0	48.10%	2241.1	47.97%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-7.791e-01	1.0000	2351.0	50.32%	2345.2	50.20%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.774e-01	1.0000	3690.0	78.98%	3685.6	78.89%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-7.735e-01	1.0000	544.0	11.64%	540.1	11.56%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-7.723e-01	1.0000	232.0	4.97%	230.0	4.92%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.720e-01	1.0000	3492.0	74.74%	3487.9	74.66%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.697e-01	1.0000	1294.0	27.70%	1289.8	27.61%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.696e-01	1.0000	608.0	13.01%	604.7	12.94%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.694e-01	1.0000	1312.0	28.08%	1307.1	27.98%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.692e-01	1.0000	4061.0	86.92%	4057.9	86.86%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-7.676e-01	1.0000	646.0	13.83%	642.1	13.74%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.669e-01	1.0000	1465.0	31.36%	1460.9	31.27%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.666e-01	1.0000	666.0	14.26%	662.8	14.19%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-7.655e-01	1.0000	3103.0	66.42%	3098.7	66.32%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-7.633e-01	1.0000	742.0	15.88%	738.4	15.81%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-7.630e-01	1.0000	1842.0	39.43%	1837.3	39.33%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.624e-01	1.0000	1948.0	41.70%	1944.0	41.61%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-7.615e-01	1.0000	2467.0	52.80%	2462.2	52.70%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-7.600e-01	1.0000	4347.0	93.04%	4344.8	93.00%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.576e-01	1.0000	354.0	7.58%	351.8	7.53%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-7.559e-01	1.0000	979.0	20.95%	975.9	20.89%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-7.555e-01	1.0000	996.0	21.32%	992.4	21.24%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.536e-01	1.0000	406.0	8.69%	403.2	8.63%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-7.519e-01	1.0000	1175.0	25.15%	1171.9	25.08%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-7.509e-01	1.0000	3438.0	73.59%	3434.4	73.51%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-7.441e-01	1.0000	2140.0	45.80%	2136.5	45.73%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.440e-01	1.0000	2477.0	53.02%	2473.7	52.95%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-7.420e-01	1.0000	650.0	13.91%	647.6	13.86%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-7.401e-01	1.0000	716.0	15.33%	713.9	15.28%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-7.368e-01	1.0000	853.0	18.26%	850.9	18.21%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-7.357e-01	1.0000	911.0	19.50%	908.7	19.45%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-7.321e-01	1.0000	3518.0	75.30%	3515.0	75.24%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.302e-01	1.0000	1351.0	28.92%	1348.8	28.87%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-7.300e-01	1.0000	1376.0	29.45%	1373.1	29.39%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-7.295e-01	1.0000	1443.0	30.89%	1440.3	30.83%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-7.283e-01	1.0000	1644.0	35.19%	1641.1	35.13%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.279e-01	1.0000	2942.0	62.97%	2939.7	62.92%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.276e-01	1.0000	2872.0	61.47%	2869.4	61.42%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.272e-01	1.0000	305.0	6.53%	303.1	6.49%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.271e-01	1.0000	1972.0	42.21%	1969.7	42.16%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-7.270e-01	1.0000	4365.0	93.43%	4363.9	93.41%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.268e-01	1.0000	2157.0	46.17%	2154.3	46.11%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.268e-01	1.0000	2223.0	47.58%	2220.7	47.53%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.258e-01	1.0000	333.0	7.13%	331.1	7.09%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-7.253e-01	1.0000	343.0	7.34%	341.2	7.30%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.220e-01	1.0000	433.0	9.27%	431.9	9.24%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.190e-01	1.0000	554.0	11.86%	552.4	11.82%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.181e-01	1.0000	601.0	12.86%	599.7	12.84%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.173e-01	1.0000	652.0	13.96%	650.3	13.92%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-7.165e-01	1.0000	704.0	15.07%	702.0	15.03%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.161e-01	1.0000	734.0	15.71%	732.8	15.69%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.157e-01	1.0000	768.0	16.44%	766.6	16.41%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.153e-01	1.0000	802.0	17.17%	800.7	17.14%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-7.152e-01	1.0000	811.0	17.36%	810.0	17.34%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-7.152e-01	1.0000	3860.0	82.62%	3859.0	82.60%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.149e-01	1.0000	841.0	18.00%	839.7	17.97%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.140e-01	1.0000	3734.0	79.92%	3732.9	79.90%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-7.139e-01	1.0000	3727.0	79.77%	3725.0	79.73%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-7.129e-01	1.0000	3596.0	76.97%	3594.9	76.94%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-7.120e-01	1.0000	1240.0	26.54%	1238.7	26.51%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-7.117e-01	1.0000	1313.0	28.10%	1312.0	28.08%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-7.115e-01	1.0000	3329.0	71.25%	3327.5	71.22%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.113e-01	1.0000	3273.0	70.06%	3271.9	70.03%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-7.112e-01	1.0000	1425.0	30.50%	1423.1	30.46%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.110e-01	1.0000	1497.0	32.04%	1495.9	32.02%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-7.109e-01	1.0000	3144.0	67.29%	3142.7	67.27%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-7.105e-01	1.0000	1667.0	35.68%	1665.8	35.65%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-7.104e-01	1.0000	2939.0	62.91%	2937.1	62.87%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.101e-01	1.0000	1908.0	40.84%	1906.1	40.80%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-7.099e-01	1.0000	2619.0	56.06%	2617.6	56.03%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.099e-01	1.0000	2540.0	54.37%	2539.0	54.34%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-7.098e-01	1.0000	2184.0	46.75%	2182.9	46.72%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-7.098e-01	1.0000	2377.0	50.88%	2375.2	50.84%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-7.098e-01	1.0000	2340.0	50.09%	2338.9	50.06%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.931e-01	1.0000	2094.0	44.82%	2093.4	44.81%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-6.931e-01	1.0000	1340.0	28.68%	1339.0	28.66%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.931e-01	1.0000	2768.0	59.25%	2767.1	59.23%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.931e-01	1.0000	1613.0	34.52%	1612.9	34.52%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.931e-01	1.0000	2509.0	53.70%	2508.5	53.69%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.931e-01	1.0000	3817.0	81.70%	3816.2	81.68%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.931e-01	1.0000	1057.0	22.62%	1056.3	22.61%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.931e-01	1.0000	2081.0	44.54%	2080.8	44.54%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.931e-01	1.0000	2934.0	62.80%	2933.5	62.79%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-6.931e-01	1.0000	2590.0	55.44%	2589.0	55.42%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.931e-01	1.0000	1596.0	34.16%	1595.4	34.15%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.931e-01	1.0000	1977.0	42.32%	1976.8	42.31%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-6.931e-01	1.0000	3474.0	74.36%	3473.2	74.34%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.931e-01	1.0000	3281.0	70.23%	3280.7	70.22%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-6.931e-01	1.0000	2518.0	53.90%	2517.9	53.89%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-6.931e-01	1.0000	2259.0	48.35%	2258.5	48.34%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.931e-01	1.0000	2614.0	55.95%	2613.8	55.95%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.931e-01	1.0000	2595.0	55.54%	2594.8	55.54%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.931e-01	1.0000	2171.0	46.47%	2170.8	46.46%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.931e-01	1.0000	1566.0	33.52%	1565.7	33.51%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.931e-01	1.0000	1599.0	34.23%	1598.3	34.21%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-6.931e-01	1.0000	3478.0	74.44%	3477.6	74.44%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.931e-01	1.0000	2070.0	44.31%	2069.6	44.30%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-6.931e-01	1.0000	886.0	18.96%	885.7	18.96%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.931e-01	1.0000	655.0	14.02%	654.9	14.02%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.931e-01	1.0000	1536.0	32.88%	1535.8	32.87%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-6.931e-01	1.0000	2572.0	55.05%	2571.6	55.04%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.931e-01	1.0000	909.0	19.46%	908.1	19.44%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.931e-01	1.0000	734.0	15.71%	733.8	15.71%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.931e-01	1.0000	632.0	13.53%	632.0	13.53%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.931e-01	1.0000	2370.0	50.73%	2369.3	50.71%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.931e-01	1.0000	3953.0	84.61%	3952.2	84.59%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.931e-01	1.0000	3242.0	69.39%	3241.8	69.39%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.931e-01	1.0000	572.0	12.24%	571.9	12.24%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.931e-01	1.0000	1092.0	23.37%	1091.8	23.37%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-6.931e-01	1.0000	717.0	15.35%	716.6	15.34%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.931e-01	1.0000	763.0	16.33%	762.8	16.33%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.931e-01	1.0000	449.0	9.61%	448.9	9.61%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.931e-01	1.0000	728.0	15.58%	728.0	15.58%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.931e-01	1.0000	3974.0	85.06%	3973.9	85.06%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.931e-01	1.0000	413.0	8.84%	412.0	8.82%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.931e-01	1.0000	4082.0	87.37%	4081.7	87.36%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.931e-01	1.0000	500.0	10.70%	499.6	10.69%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.931e-01	1.0000	4325.0	92.57%	4324.9	92.57%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-6.931e-01	1.0000	400.0	8.56%	399.7	8.56%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.931e-01	1.0000	4256.0	91.10%	4255.0	91.07%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-6.931e-01	1.0000	516.0	11.04%	515.8	11.04%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.931e-01	1.0000	309.0	6.61%	308.9	6.61%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-6.931e-01	1.0000	4252.0	91.01%	4251.5	91.00%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.931e-01	1.0000	287.0	6.14%	286.7	6.14%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-6.931e-01	1.0000	332.0	7.11%	331.9	7.10%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.931e-01	1.0000	267.0	5.71%	266.9	5.71%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.931e-01	1.0000	409.0	8.75%	408.9	8.75%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.931e-01	1.0000	198.0	4.24%	197.9	4.24%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.931e-01	1.0000	291.0	6.23%	291.0	6.23%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.931e-01	1.0000	220.0	4.71%	220.0	4.71%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.931e-01	1.0000	201.0	4.30%	200.1	4.28%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.931e-01	1.0000	213.0	4.56%	213.0	4.56%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.931e-01	1.0000	259.0	5.54%	258.9	5.54%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.931e-01	1.0000	239.0	5.12%	238.9	5.11%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.931e-01	1.0000	255.0	5.46%	254.9	5.46%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-6.931e-01	1.0000	226.0	4.84%	225.1	4.82%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.931e-01	1.0000	4409.0	94.37%	4409.0	94.37%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.931e-01	1.0000	253.0	5.42%	252.9	5.41%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.931e-01	1.0000	4496.0	96.23%	4495.8	96.23%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.931e-01	1.0000	117.0	2.50%	117.0	2.50%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.931e-01	1.0000	4582.0	98.07%	4581.9	98.07%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.931e-01	1.0000	4582.0	98.07%	4581.0	98.05%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.931e-01	1.0000	4581.0	98.05%	4581.0	98.05%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.931e-01	1.0000	84.0	1.80%	84.0	1.80%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.931e-01	1.0000	4594.0	98.33%	4593.8	98.33%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.931e-01	1.0000	4616.0	98.80%	4615.9	98.80%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.931e-01	1.0000	62.0	1.33%	62.0	1.33%
SeqBias: CG bias	SSSSSSSSSS	1e0	-6.931e-01	1.0000	4667.0	99.89%	4667.0	99.89%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-6.931e-01	1.0000	53.0	1.13%	52.9	1.13%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-6.931e-01	1.0000	39.0	0.83%	39.0	0.83%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.931e-01	1.0000	31.0	0.66%	31.0	0.66%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-6.931e-01	1.0000	4647.0	99.46%	4646.8	99.46%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-6.931e-01	1.0000	4650.0	99.53%	4650.0	99.53%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.768e-01	1.0000	2383.0	51.01%	2383.9	51.02%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.768e-01	1.0000	2273.0	48.65%	2273.1	48.65%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-6.767e-01	1.0000	2522.0	53.98%	2522.3	53.99%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-6.767e-01	1.0000	2599.0	55.63%	2599.5	55.64%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.766e-01	1.0000	1963.0	42.02%	1964.0	42.04%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-6.765e-01	1.0000	2765.0	59.18%	2765.3	59.19%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.764e-01	1.0000	1868.0	39.98%	1868.8	40.00%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.763e-01	1.0000	2888.0	61.82%	2888.9	61.83%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.761e-01	1.0000	1701.0	36.41%	1702.0	36.43%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.759e-01	1.0000	1600.0	34.25%	1600.9	34.27%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-6.757e-01	1.0000	1509.0	32.30%	1509.8	32.32%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.755e-01	1.0000	1449.0	31.01%	1449.5	31.03%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.754e-01	1.0000	3227.0	69.07%	3227.5	69.08%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.753e-01	1.0000	3271.0	70.01%	3271.5	70.02%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.752e-01	1.0000	1365.0	29.22%	1365.0	29.22%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.751e-01	1.0000	3327.0	71.21%	3327.4	71.22%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.749e-01	1.0000	3362.0	71.96%	3362.6	71.97%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.749e-01	1.0000	3368.0	72.09%	3368.2	72.09%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.748e-01	1.0000	1275.0	27.29%	1275.2	27.29%
Tal1	CATCTG	1e0	-6.748e-01	1.0000	3397.0	72.71%	3397.7	72.73%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.746e-01	1.0000	3430.0	73.42%	3430.7	73.43%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.741e-01	1.0000	3542.0	75.81%	3542.5	75.82%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.740e-01	1.0000	1125.0	24.08%	1125.9	24.10%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.738e-01	1.0000	1094.0	23.42%	1094.4	23.43%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-6.731e-01	1.0000	979.0	20.95%	979.8	20.97%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.730e-01	1.0000	970.0	20.76%	970.7	20.78%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.729e-01	1.0000	956.0	20.46%	956.5	20.47%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.720e-01	1.0000	3817.0	81.70%	3817.2	81.70%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.720e-01	1.0000	3822.0	81.81%	3822.1	81.81%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.713e-01	1.0000	787.0	16.85%	787.9	16.86%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.704e-01	1.0000	706.0	15.11%	706.9	15.13%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.692e-01	1.0000	625.0	13.38%	626.0	13.40%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.685e-01	1.0000	585.0	12.52%	585.2	12.53%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.676e-01	1.0000	537.0	11.49%	537.2	11.50%
SeqBias: TA-repeat	TATATATATA	1e0	-6.666e-01	1.0000	4179.0	89.45%	4179.3	89.45%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.641e-01	1.0000	401.0	8.58%	401.2	8.59%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.615e-01	1.0000	332.0	7.11%	332.1	7.11%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.607e-01	1.0000	2335.0	49.98%	2336.4	50.01%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.607e-01	1.0000	2396.0	51.28%	2397.6	51.32%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.607e-01	1.0000	2258.0	48.33%	2259.6	48.36%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.606e-01	1.0000	2443.0	52.29%	2444.3	52.32%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.605e-01	1.0000	2128.0	45.55%	2129.4	45.58%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.605e-01	1.0000	2088.0	44.69%	2089.0	44.71%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.602e-01	1.0000	1931.0	41.33%	1932.8	41.37%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.600e-01	1.0000	300.0	6.42%	300.2	6.42%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.599e-01	1.0000	1840.0	39.38%	1841.9	39.42%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.593e-01	1.0000	2999.0	64.19%	3000.9	64.23%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.592e-01	1.0000	3026.0	64.77%	3027.8	64.81%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.592e-01	1.0000	3031.0	64.88%	3032.6	64.91%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.588e-01	1.0000	1569.0	33.58%	1570.1	33.61%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-6.572e-01	1.0000	3348.0	71.66%	3349.7	71.70%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.555e-01	1.0000	3525.0	75.45%	3526.1	75.47%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.555e-01	1.0000	3530.0	75.56%	3531.9	75.60%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.551e-01	1.0000	1106.0	23.67%	1108.0	23.72%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.548e-01	1.0000	1082.0	23.16%	1083.1	23.18%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.540e-01	1.0000	1024.0	21.92%	1025.1	21.94%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.529e-01	1.0000	943.0	20.18%	944.6	20.22%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.514e-01	1.0000	3815.0	81.66%	3816.2	81.68%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-6.511e-01	1.0000	179.0	3.83%	179.1	3.83%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.506e-01	1.0000	816.0	17.47%	817.3	17.49%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.501e-01	1.0000	793.0	16.97%	794.1	17.00%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-6.490e-01	1.0000	742.0	15.88%	743.7	15.92%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.483e-01	1.0000	156.0	3.34%	156.0	3.34%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.463e-01	1.0000	640.0	13.70%	641.2	13.72%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.454e-01	1.0000	137.0	2.93%	137.1	2.93%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-6.448e-01	1.0000	2281.0	48.82%	2283.9	48.89%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.448e-01	1.0000	2259.0	48.35%	2261.7	48.41%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.447e-01	1.0000	2543.0	54.43%	2545.3	54.48%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.443e-01	1.0000	1988.0	42.55%	1990.7	42.61%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-6.442e-01	1.0000	1957.0	41.89%	1959.1	41.93%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-6.440e-01	1.0000	2770.0	59.29%	2772.6	59.34%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.439e-01	1.0000	2798.0	59.89%	2800.0	59.93%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.436e-01	1.0000	2851.0	61.02%	2853.2	61.07%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-6.432e-01	1.0000	2934.0	62.80%	2936.9	62.86%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.429e-01	1.0000	1681.0	35.98%	1683.0	36.02%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.424e-01	1.0000	1607.0	34.40%	1609.1	34.44%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.406e-01	1.0000	112.0	2.40%	112.1	2.40%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.383e-01	1.0000	441.0	9.44%	442.2	9.47%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-6.378e-01	1.0000	1183.0	25.32%	1185.4	25.37%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-6.374e-01	1.0000	1155.0	24.72%	1157.2	24.77%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-6.335e-01	1.0000	948.0	20.29%	950.3	20.34%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.292e-01	1.0000	2189.0	46.85%	2192.0	46.92%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-6.288e-01	1.0000	776.0	16.61%	778.2	16.66%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-6.287e-01	1.0000	771.0	16.50%	773.1	16.55%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.285e-01	1.0000	1979.0	42.36%	1982.3	42.43%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-6.280e-01	1.0000	3918.0	83.86%	3920.9	83.92%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-6.271e-01	1.0000	4603.0	98.52%	4603.9	98.54%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.256e-01	1.0000	3110.0	66.57%	3113.2	66.64%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-6.247e-01	1.0000	1483.0	31.74%	1486.0	31.81%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.244e-01	1.0000	265.0	5.67%	267.0	5.71%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.212e-01	1.0000	1244.0	26.63%	1247.5	26.70%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.183e-01	1.0000	1097.0	23.48%	1100.2	23.55%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.154e-01	1.0000	49.0	1.05%	49.0	1.05%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.078e-01	1.0000	1445.0	30.93%	1449.7	31.03%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.066e-01	1.0000	1371.0	29.35%	1375.2	29.44%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.066e-01	1.0000	3935.0	84.23%	3938.3	84.29%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.034e-01	1.0000	3456.0	73.97%	3460.7	74.07%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.985e-01	1.0000	586.0	12.54%	589.1	12.61%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-5.977e-01	1.0000	1954.0	41.82%	1959.5	41.94%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.952e-01	1.0000	540.0	11.56%	543.8	11.64%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.945e-01	1.0000	3046.0	65.20%	3051.2	65.31%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.916e-01	1.0000	3825.0	81.87%	3829.4	81.97%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.846e-01	1.0000	421.0	9.01%	424.1	9.08%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-5.812e-01	1.0000	1781.0	38.12%	1788.0	38.27%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.807e-01	1.0000	1028.0	22.00%	1033.5	22.12%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.792e-01	1.0000	203.0	4.35%	205.9	4.41%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.786e-01	1.0000	3695.0	79.09%	3700.7	79.21%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.782e-01	1.0000	3098.0	66.31%	3104.3	66.44%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.693e-01	1.0000	2149.0	46.00%	2156.3	46.15%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-5.689e-01	1.0000	18.0	0.39%	18.0	0.39%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.685e-01	1.0000	2002.0	42.85%	2009.3	43.01%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.650e-01	1.0000	286.0	6.12%	289.1	6.19%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.650e-01	1.0000	286.0	6.12%	289.1	6.19%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.648e-01	1.0000	1677.0	35.89%	1684.1	36.05%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.634e-01	1.0000	1593.0	34.10%	1600.2	34.25%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.597e-01	1.0000	3719.0	79.60%	3725.8	79.75%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-5.537e-01	1.0000	2705.0	57.90%	2713.9	58.09%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.528e-01	1.0000	4102.0	87.80%	4107.9	87.93%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.472e-01	1.0000	1533.0	32.81%	1541.0	32.98%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-5.435e-01	1.0000	4660.0	99.74%	4660.0	99.74%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-5.426e-01	1.0000	4472.0	95.72%	4475.1	95.79%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-5.413e-01	1.0000	930.0	19.91%	937.1	20.06%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-5.375e-01	1.0000	11.0	0.24%	11.0	0.24%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.327e-01	1.0000	1090.0	23.33%	1098.2	23.51%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-5.312e-01	1.0000	1480.0	31.68%	1489.2	31.87%
SeqBias: CA-repeat	CACACACACA	1e0	-5.229e-01	1.0000	4663.0	99.81%	4663.0	99.81%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-5.105e-01	1.0000	296.0	6.34%	301.0	6.44%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-4.767e-01	1.0000	196.0	4.20%	201.1	4.30%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-4.486e-01	1.0000	63.0	1.35%	67.0	1.43%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	0.000e+00	1.0000	4672.0	100.00%	4672.0	100.00%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	0.000e+00	1.0000	4672.0	100.00%	4672.0	100.00%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	0.000e+00	1.0000	4672.0	100.00%	4672.0	100.00%
SeqBias: G/A bias	RRRRRRRRRR	1e0	0.000e+00	1.0000	4672.0	100.00%	4672.0	100.00%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	0.000e+00	1.0000	4672.0	100.00%	4672.0	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	4672.0	100.00%	4672.0	100.00%