Information for 5-TGATCACCGT (Motif 9)


Reverse Opposite:

p-value:1e-1
log p-value:-2.411e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets979.6 +/- 451.4bp
Average Position of motif in Background1195.7 +/- 528.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0016.1_Cux1_1/Jaspar

Match Rank:1
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------TGATCACCGT-
ACCGGTTGATCACCTGA

MA0354.1_PDR8/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGATCACCGT
--ATCTCCGN

MA0428.1_YKL222C/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TGATCACCGT-
--ATTTCCGTT

MA0439.1_YRR1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGATCACCGT
CTTATCTCCGC

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGATCACCGT---
NNNNTGAGCACTGTNNG

PH0017.1_Cux1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGATCACCGT--
TAGTGATCATCATTA

PB0046.1_Mybl1_1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGATCACCGT------
TTGAAAACCGTTAATTT

MA0348.1_OAF1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGATCACCGT
-TATCTCCGA

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGATCACCGT
CAGATCA----

RTG3/Literature(Harbison)/Yeast

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGATCACCGT
-GGTCAC---