Information for 5-GTGCGTAGCCCT (Motif 5)


Reverse Opposite:

p-value:1e-1
log p-value:-4.160e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets980.3 +/- 625.8bp
Average Position of motif in Background111.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0403.1_TBF1/Jaspar

Match Rank:1
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GTGCGTAGCCCT--
------AACCCTAA

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GTGCGTAGCCCT
CGTGGGTGGTCC-

PB0094.1_Zfp128_1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GTGCGTAGCCCT-
TCTTTGGCGTACCCTAA

vvl/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GTGCGTAGCCCT
-TGCATA-----

MA0254.1_vvl/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGCGTAGCCCT
-TGCATA-----

MA0295.1_FHL1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTGCGTAGCCCT
TTTGCGTC-----

PHO2/PHO2_H2O2Hi/[](Harbison)/Yeast

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTGCGTAGCCCT
CGTGCGGTGCG--

PB0143.1_Klf7_2/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GTGCGTAGCCCT
NNNTNGGGCGTATNNTN

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GTGCGTAGCCCT
----CNAGGCCT

MA0032.1_FOXC1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GTGCGTAGCCCT
GGTAAGTA-----