Information for 3-CAGAAGGGTTGG (Motif 3)


Reverse Opposite:

p-value:1e-1
log p-value:-4.160e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets1179.7 +/- 447.3bp
Average Position of motif in Background1473.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Kr/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAGAAGGGTTGG
-AAAAGGGTT--

Kr/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CAGAAGGGTTGG
--AAAGGGTTA-

Kr/dmmpmm(Noyes)/fly

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CAGAAGGGTTGG
CNAAAGGGTTA-

MA0452.2_KR/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGAAGGGTTGG-
NNAAAAGGGTTAAN

Kr/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGAAGGGTTGG
-AAAAGGGTTA-

Kr/dmmpmm(Down)/fly

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGAAGGGTTGG
-AAAAGGGTTA-

P(MYB)/Zea mays/AthaMap

Match Rank:7
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CAGAAGGGTTGG-
----CNGGTAGGT

MSN2/MSN2_H2O2Hi/1-MSN2(Harbison)/Yeast

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGAAGGGTTGG
---AAGGGGCGG

MA0133.1_BRCA1/Jaspar

Match Rank:9
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CAGAAGGGTTGG
-----GTGTTGN

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGAAGGGTTGG-
GGAGAAAGGTGCGA