Information for 2-TGAAACGCAAAA (Motif 2)


Reverse Opposite:

p-value:1e-2
log p-value:-4.854e+00
Information Content per bp:1.893
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets976.1 +/- 523.9bp
Average Position of motif in Background363.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0393.1_STE12/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TGAAACGCAAAA
TGAAACA-----

STE12(MacIsaac)/Yeast

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGAAACGCAAAA
TGAAACA-----

STE12/STE12_Alpha/92-STE12(Harbison)/Yeast

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGAAACGCAAAA
TGAAACA-----

DIG1/DIG1_YPD/32-STE12(Harbison)/Yeast

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TGAAACGCAAAA
TGAAACA-----

DIG1(MacIsaac)/Yeast

Match Rank:5
Score:0.67
Offset:-9
Orientation:forward strand
Alignment:---------TGAAACGCAAAA
ANACANTTNTGAAACA-----

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGAAACGCAAAA
ACTGAAACCA----

MA0204.1_Six4/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGAAACGCAAAA
TGATAC------

SeqBias: polyA-repeat

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TGAAACGCAAAA
--AAAAAAAAAA

STB1/STB1_YPD/1-SWI4,1-SWI6(Harbison)/Yeast

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TGAAACGCAAAA
--AAACGCGAAA

MA0260.1_che-1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGAAACGCAAAA
-GAAACC-----