Information for 1-CCGWTGTA (Motif 10)


Reverse Opposite:

p-value:1e0
log p-value:-1.452e+00
Information Content per bp:1.945
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif43.9
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets1061.1 +/- 516.9bp
Average Position of motif in Background1088.4 +/- 514.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCGWTGTA------
AGGACGCTGTAAAGGGA

MA0143.3_Sox2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCGWTGTA
CCTTTGTT

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCGWTGTA------
AAGACGCTGTAAAGCGA

MA0442.1_SOX10/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCGWTGTA
-CTTTGT-

Unknown3/Arabidopsis-Promoters/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCGWTGTA--
CCGGTTTART

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCGWTGTA--
CCWTTGTYYB

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCGWTGTA
CCWTTGTY

MA0032.1_FOXC1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCGWTGTA
GGTAAGTA

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCGWTGTA--
CCATTGTTNY

Tal1

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCGWTGTA
CAGATG--