Information for 3-CGATGTAT (Motif 9)


Reverse Opposite:

p-value:1e0
log p-value:-1.485e+00
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets430.8 +/- 297.2bp
Average Position of motif in Background266.6 +/- 118.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TEIL(AP2/EREBP)/Nicotiana tabacum/AthaMap

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CGATGTAT--
--ATGTACCT

PB0163.1_Six6_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGATGTAT------
ATGGGATATATCCGCCT

sd/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGATGTAT
AANATGTNT

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CGATGTAT-----
AGGACGCTGTAAAGGGA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGATGTAT---
ATGATKGATGRC

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CGATGTAT-----
AAGACGCTGTAAAGCGA

MA0032.1_FOXC1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGATGTAT
GGTAAGTA-

MA0210.1_ara/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CGATGTAT
---TGTTA

dsx/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CGATGTAT---
NTAANACAATGTANCNN

MA0594.1_Hoxa9/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGATGTAT---
TGATTTATGGC