Information for 3-GGAACGGGAG (Motif 6)


Reverse Opposite:

p-value:1e0
log p-value:-1.935e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets498.0 +/- 229.5bp
Average Position of motif in Background502.8 +/- 73.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGAACGGGAG----
NNNACCGAGAGTNNN

MA0469.1_E2F3/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GGAACGGGAG
NNGTGNGGGCGGGAG

MA0261.1_lin-14/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGAACGGGAG
-GAACAC---

MA0261.1_lin-14/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGAACGGGAG
-GAACAC---

NDD1(MacIsaac)/Yeast

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGAACGGGAG-
-AAAGGGGAAA

ovo/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGAACGGGAG
AGTAACGG---

MA0420.1_YBR239C/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGAACGGGAG
ACCGGAAC-----

GFY(?)/Promoter/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGAACGGGAG-
GGGAATTGTAGT

MA0024.2_E2F1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGAACGGGAG-
CGGGCGGGAGG

RAP1/RAP1_YPD/85-RAP1(Harbison)/Yeast

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGAACGGGAG
TGTACGGGTG