Information for 3-GCCCCCAMGGGC (Motif 4)


Reverse Opposite:

p-value:1e-1
log p-value:-2.910e+00
Information Content per bp:1.912
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets415.6 +/- 196.2bp
Average Position of motif in Background398.3 +/- 67.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0163.1_PLAG1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GCCCCCAMGGGC---
-CCCCCTTGGGCCCC

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCCCCCAMGGGC
GTCCCCAGGGGA

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCCCCCAMGGGC--
TTGCCCTAGGGCAT

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCCCCCAMGGGC--
CCGCCCAAGGGCAG

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCCCCCAMGGGC--
CCCCCCCGGGGGNN

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCAMGGGC--
CCCCCCCGGGGGGGT

MA0268.1_ADR1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCCCCCAMGGGC
-ACCCCAC----

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCCCCCAMGGGC--
--GCCTCAGGGCAT

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCAMGGGC--
CCCCCCCGGGGGGGT

MA0337.1_MIG1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCCCCCAMGGGC
-CCCCCGC----