Information for 2-CCATCCTAGCTC (Motif 3)


Reverse Opposite:

p-value:1e-1
log p-value:-2.910e+00
Information Content per bp:1.942
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets441.0 +/- 279.8bp
Average Position of motif in Background318.6 +/- 152.9bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCATCCTAGCTC
GATAACATCCTAGTAG

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCATCCTAGCTC
--GTCCTAA---

PB0098.1_Zfp410_1/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CCATCCTAGCTC-
NNNTCCATCCCATAANN

MA0598.1_EHF/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCATCCTAGCTC
CCTTCCTG----

MAC1(MacIsaac)/Yeast

Match Rank:5
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CCATCCTAGCTC-
---TTTTCGCTCA

MA0592.1_ESRRA/Jaspar

Match Rank:6
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CCATCCTAGCTC---
----CCAAGGTCACA

GLN3(MacIsaac)/Yeast

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCATCCTAGCTC
-TATCTTATCT-

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------CCATCCTAGCTC
ACTATGCCAACCTACC--

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CCATCCTAGCTC------
-TATTCAAGGTCATGCGA

ttk/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CCATCCTAGCTC
-GGTCCTGCC--