Information for 1-CCGGGTGCAA (Motif 2)


Reverse Opposite:

p-value:1e-1
log p-value:-2.910e+00
Information Content per bp:1.896
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets473.6 +/- 295.6bp
Average Position of motif in Background464.9 +/- 120.5bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YDR026C(MacIsaac)/Yeast

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CCGGGTGCAA
CCGGGT----

AFT2(MacIsaac)/Yeast

Match Rank:2
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CCGGGTGCAA
--GGGTGCA-

RCS1(MacIsaac)/Yeast

Match Rank:3
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CCGGGTGCAA
--GGGTGCA-

MA0269.1_AFT1/Jaspar

Match Rank:4
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CCGGGTGCAA-------
CNANNCGGGTGCAATATNNNA

AFT2/AFT2_H2O2Lo/10-RCS1[~AFT2](Harbison)/Yeast

Match Rank:5
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CCGGGTGCAA
--GGGTGC--

RCS1/RCS1_H2O2Hi/35-RCS1(Harbison)/Yeast

Match Rank:6
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CCGGGTGCAA-
--GGGTGCANT

MA0358.1_PUT3/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCGGGTGCAA
CCCGGGAA---

PB0044.1_Mtf1_1/Jaspar

Match Rank:8
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CCGGGTGCAA---
GGGCCGTGTGCAAAAA

MA0344.1_NHP10/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCGGGTGCAA
GCCGGGGA---

YDR026c/YDR026c_YPD/[](Harbison)/Yeast

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCGGGTGCAA
GCCGGGTAAA-