Information for 1-CCCAGAAGGGTT (Motif 1)


Reverse Opposite:

p-value:1e-1
log p-value:-3.941e+00
Information Content per bp:1.878
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets443.9 +/- 306.4bp
Average Position of motif in Background572.3 +/- 293.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Kr/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CCCAGAAGGGTT
---AAAAGGGTT

Kr/dmmpmm(Noyes)/fly

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CCCAGAAGGGTT-
--CNAAAGGGTTA

Kr/dmmpmm(Papatsenko)/fly

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CCCAGAAGGGTT-
----AAAGGGTTA

Kr/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CCCAGAAGGGTT-
---AAAAGGGTTA

Kr/dmmpmm(Down)/fly

Match Rank:5
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CCCAGAAGGGTT-
---AAAAGGGTTA

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCCAGAAGGGTT---
-GGAGAAAGGTGCGA

MA0452.2_KR/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCCAGAAGGGTT---
-NNAAAAGGGTTAAN

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCCAGAAGGGTT
CACAGCAGGGGG

MA0461.1_Atoh1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCCAGAAGGGTT
--CAGATGGC--

Tal1

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCCAGAAGGGTT
--CAGATG----