Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2231)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2231)	% of Background Sequences with Motif
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.023e+00	1.0000	843.0	37.79%	830.8	37.24%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.763e-01	1.0000	277.0	12.42%	269.2	12.07%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.416e-01	1.0000	361.0	16.18%	353.1	15.83%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.908e-01	1.0000	1025.0	45.94%	1016.9	45.58%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.791e-01	1.0000	1661.0	74.45%	1653.9	74.13%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-8.755e-01	1.0000	485.0	21.74%	478.8	21.46%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-8.728e-01	1.0000	801.0	35.90%	793.4	35.56%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.356e-01	1.0000	1002.0	44.91%	995.8	44.64%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-8.287e-01	1.0000	605.0	27.12%	599.2	26.86%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-8.214e-01	1.0000	205.0	9.19%	201.2	9.02%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-8.202e-01	1.0000	719.0	32.23%	713.9	32.00%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.198e-01	1.0000	210.0	9.41%	206.9	9.27%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.118e-01	1.0000	1569.0	70.33%	1563.0	70.06%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-8.105e-01	1.0000	932.0	41.77%	926.4	41.52%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-8.098e-01	1.0000	1938.0	86.87%	1933.9	86.68%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.097e-01	1.0000	959.0	42.99%	953.4	42.73%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-8.008e-01	1.0000	576.0	25.82%	571.9	25.63%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.947e-01	1.0000	665.0	29.81%	660.7	29.61%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.908e-01	1.0000	1749.0	78.40%	1744.7	78.20%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-7.896e-01	1.0000	362.0	16.23%	358.2	16.05%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.891e-01	1.0000	153.0	6.86%	150.7	6.76%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-7.810e-01	1.0000	1065.0	47.74%	1060.2	47.52%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.760e-01	1.0000	500.0	22.41%	496.2	22.24%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-7.579e-01	1.0000	921.0	41.28%	917.1	41.11%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-7.567e-01	1.0000	984.0	44.11%	980.9	43.97%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.547e-01	1.0000	1116.0	50.02%	1112.7	49.87%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.514e-01	1.0000	96.0	4.30%	94.8	4.25%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-7.498e-01	1.0000	101.0	4.53%	99.1	4.44%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-7.430e-01	1.0000	551.0	24.70%	548.2	24.57%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-7.396e-01	1.0000	636.0	28.51%	633.1	28.38%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.390e-01	1.0000	149.0	6.68%	147.1	6.60%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.389e-01	1.0000	656.0	29.40%	654.0	29.31%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.388e-01	1.0000	2021.0	90.59%	2019.0	90.50%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-7.388e-01	1.0000	660.0	29.58%	657.2	29.46%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.375e-01	1.0000	700.0	31.38%	697.1	31.25%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.368e-01	1.0000	727.0	32.59%	724.0	32.45%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.337e-01	1.0000	1933.0	86.64%	1930.1	86.51%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-7.332e-01	1.0000	879.0	39.40%	876.6	39.29%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.319e-01	1.0000	949.0	42.54%	946.6	42.43%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-7.315e-01	1.0000	1871.0	83.86%	1868.8	83.76%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.315e-01	1.0000	205.0	9.19%	204.0	9.14%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-7.302e-01	1.0000	1067.0	47.83%	1064.2	47.70%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-7.299e-01	1.0000	1092.0	48.95%	1089.3	48.83%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-7.289e-01	1.0000	1186.0	53.16%	1183.2	53.03%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-7.280e-01	1.0000	243.0	10.89%	241.1	10.80%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.280e-01	1.0000	1639.0	73.46%	1637.0	73.37%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-7.278e-01	1.0000	1363.0	61.09%	1361.0	61.00%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-7.278e-01	1.0000	1367.0	61.27%	1364.9	61.18%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.277e-01	1.0000	1376.0	61.68%	1373.4	61.56%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-7.275e-01	1.0000	1490.0	66.79%	1487.8	66.69%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.253e-01	1.0000	279.0	12.51%	277.4	12.43%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.231e-01	1.0000	314.0	14.07%	312.0	13.99%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.222e-01	1.0000	331.0	14.84%	329.9	14.79%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.213e-01	1.0000	350.0	15.69%	348.8	15.63%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.195e-01	1.0000	390.0	17.48%	388.9	17.43%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-7.181e-01	1.0000	426.0	19.09%	424.9	19.05%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.180e-01	1.0000	427.0	19.14%	426.0	19.09%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-7.173e-01	1.0000	447.0	20.04%	445.3	19.96%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-7.167e-01	1.0000	467.0	20.93%	465.2	20.85%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.160e-01	1.0000	487.0	21.83%	485.2	21.75%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.149e-01	1.0000	527.0	23.62%	526.0	23.58%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-7.139e-01	1.0000	566.0	25.37%	564.0	25.28%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.131e-01	1.0000	596.0	26.71%	595.0	26.67%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.125e-01	1.0000	624.0	27.97%	622.7	27.91%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-7.120e-01	1.0000	649.0	29.09%	647.1	29.01%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-7.119e-01	1.0000	652.0	29.22%	650.9	29.17%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.118e-01	1.0000	659.0	29.54%	657.9	29.49%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-7.095e-01	1.0000	787.0	35.28%	785.9	35.23%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.092e-01	1.0000	801.0	35.90%	799.1	35.82%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.081e-01	1.0000	878.0	39.35%	876.1	39.27%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.077e-01	1.0000	909.0	40.74%	908.0	40.70%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.074e-01	1.0000	929.0	41.64%	927.3	41.56%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.073e-01	1.0000	938.0	42.04%	936.8	41.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.063e-01	1.0000	1014.0	45.45%	1012.7	45.39%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.062e-01	1.0000	1027.0	46.03%	1025.3	45.96%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.047e-01	1.0000	1164.0	52.17%	1162.6	52.11%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-7.046e-01	1.0000	1167.0	52.31%	1165.4	52.24%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.045e-01	1.0000	1183.0	53.03%	1181.0	52.94%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-7.039e-01	1.0000	1238.0	55.49%	1236.9	55.44%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-7.018e-01	1.0000	1473.0	66.02%	1471.9	65.97%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.011e-01	1.0000	1549.0	69.43%	1547.2	69.35%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.003e-01	1.0000	1647.0	73.82%	1645.0	73.74%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-7.002e-01	1.0000	1661.0	74.45%	1659.1	74.37%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-6.997e-01	1.0000	1723.0	77.23%	1721.9	77.18%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.990e-01	1.0000	1801.0	80.73%	1799.7	80.67%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.987e-01	1.0000	1833.0	82.16%	1831.2	82.08%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.984e-01	1.0000	1876.0	84.09%	1874.8	84.03%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.967e-01	1.0000	2048.0	91.80%	2046.9	91.75%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-6.919e-01	1.0000	24.0	1.08%	23.9	1.07%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.918e-01	1.0000	29.0	1.30%	28.9	1.30%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.912e-01	1.0000	58.0	2.60%	58.0	2.60%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-6.907e-01	1.0000	89.0	3.99%	89.0	3.99%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.906e-01	1.0000	97.0	4.35%	96.0	4.30%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-6.906e-01	1.0000	100.0	4.48%	99.4	4.45%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.905e-01	1.0000	103.0	4.62%	102.7	4.60%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.904e-01	1.0000	115.0	5.15%	115.0	5.15%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.901e-01	1.0000	139.0	6.23%	138.9	6.23%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.901e-01	1.0000	140.0	6.28%	139.8	6.27%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-6.899e-01	1.0000	153.0	6.86%	152.8	6.85%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.897e-01	1.0000	168.0	7.53%	167.3	7.50%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.893e-01	1.0000	208.0	9.32%	208.0	9.32%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.891e-01	1.0000	226.0	10.13%	225.8	10.12%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-6.891e-01	1.0000	226.0	10.13%	225.8	10.12%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.891e-01	1.0000	236.0	10.58%	235.8	10.57%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.889e-01	1.0000	247.0	11.07%	246.8	11.06%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.888e-01	1.0000	266.0	11.92%	265.7	11.91%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.887e-01	1.0000	278.0	12.46%	278.0	12.46%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-6.885e-01	1.0000	294.0	13.18%	293.8	13.17%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.885e-01	1.0000	300.0	13.45%	299.9	13.44%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-6.883e-01	1.0000	316.0	14.16%	315.0	14.12%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.883e-01	1.0000	319.0	14.30%	318.9	14.29%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.881e-01	1.0000	342.0	15.33%	342.0	15.33%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-6.881e-01	1.0000	343.0	15.37%	342.9	15.37%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.879e-01	1.0000	357.0	16.00%	356.0	15.96%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.879e-01	1.0000	360.0	16.14%	359.7	16.12%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-6.879e-01	1.0000	360.0	16.14%	360.0	16.14%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.877e-01	1.0000	381.0	17.08%	380.8	17.07%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-6.877e-01	1.0000	383.0	17.17%	382.7	17.15%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-6.876e-01	1.0000	395.0	17.71%	394.7	17.69%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.874e-01	1.0000	421.0	18.87%	420.7	18.86%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.873e-01	1.0000	436.0	19.54%	435.9	19.54%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.870e-01	1.0000	464.0	20.80%	463.6	20.78%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.860e-01	1.0000	597.0	26.76%	596.3	26.73%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.857e-01	1.0000	633.0	28.37%	632.8	28.36%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.855e-01	1.0000	650.0	29.13%	649.8	29.13%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-6.854e-01	1.0000	664.0	29.76%	664.0	29.76%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.849e-01	1.0000	720.0	32.27%	719.4	32.25%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.848e-01	1.0000	733.0	32.86%	732.8	32.85%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-6.848e-01	1.0000	742.0	33.26%	741.6	33.24%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.847e-01	1.0000	749.0	33.57%	748.8	33.56%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.834e-01	1.0000	896.0	40.16%	895.7	40.15%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.830e-01	1.0000	937.0	42.00%	936.8	41.99%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.824e-01	1.0000	1008.0	45.18%	1007.6	45.16%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.821e-01	1.0000	1031.0	46.21%	1030.1	46.17%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-6.821e-01	1.0000	1036.0	46.44%	1035.3	46.41%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.818e-01	1.0000	1063.0	47.65%	1062.8	47.64%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-6.818e-01	1.0000	1064.0	47.69%	1063.5	47.67%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.816e-01	1.0000	1083.0	48.54%	1082.7	48.53%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-6.816e-01	1.0000	1085.0	48.63%	1085.0	48.63%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-6.812e-01	1.0000	1124.0	50.38%	1123.2	50.34%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.809e-01	1.0000	1153.0	51.68%	1152.5	51.66%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-6.806e-01	1.0000	1176.0	52.71%	1176.0	52.71%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.803e-01	1.0000	1207.0	54.10%	1206.6	54.08%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.798e-01	1.0000	1248.0	55.94%	1247.8	55.93%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-6.788e-01	1.0000	1329.0	59.57%	1328.4	59.54%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.780e-01	1.0000	1385.0	62.08%	1384.7	62.07%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.778e-01	1.0000	1397.0	62.62%	1396.8	62.61%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-6.762e-01	1.0000	1498.0	67.14%	1498.0	67.14%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.760e-01	1.0000	1511.0	67.73%	1510.9	67.72%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-6.747e-01	1.0000	1583.0	70.95%	1582.7	70.94%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.743e-01	1.0000	1601.0	71.76%	1600.8	71.75%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.738e-01	1.0000	1625.0	72.84%	1625.0	72.84%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.730e-01	1.0000	1660.0	74.41%	1659.4	74.38%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.724e-01	1.0000	1685.0	75.53%	1684.9	75.52%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.701e-01	1.0000	1766.0	79.16%	1765.8	79.15%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.696e-01	1.0000	1784.0	79.96%	1783.6	79.95%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.661e-01	1.0000	1876.0	84.09%	1875.5	84.07%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.632e-01	1.0000	1932.0	86.60%	1931.8	86.59%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.599e-01	1.0000	724.0	32.45%	724.9	32.49%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.597e-01	1.0000	854.0	38.28%	854.7	38.31%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.594e-01	1.0000	927.0	41.55%	927.7	41.58%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.594e-01	1.0000	577.0	25.86%	577.8	25.90%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-6.593e-01	1.0000	944.0	42.31%	944.1	42.32%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.593e-01	1.0000	954.0	42.76%	954.8	42.80%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.592e-01	1.0000	547.0	24.52%	547.1	24.52%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.591e-01	1.0000	982.0	44.02%	982.5	44.04%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.591e-01	1.0000	535.0	23.98%	535.8	24.02%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.590e-01	1.0000	996.0	44.64%	996.9	44.69%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.587e-01	1.0000	504.0	22.59%	504.3	22.60%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.585e-01	1.0000	482.0	21.60%	482.2	21.61%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-6.584e-01	1.0000	476.0	21.34%	476.2	21.35%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.584e-01	1.0000	1073.0	48.10%	1073.1	48.10%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.581e-01	1.0000	1099.0	49.26%	1099.9	49.30%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.579e-01	1.0000	444.0	19.90%	444.7	19.93%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-6.578e-01	1.0000	438.0	19.63%	438.7	19.66%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.575e-01	1.0000	1155.0	51.77%	1155.3	51.78%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-6.575e-01	1.0000	1157.0	51.86%	1157.7	51.89%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-6.574e-01	1.0000	1162.0	52.08%	1162.7	52.11%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.574e-01	1.0000	1169.0	52.40%	1169.8	52.43%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.569e-01	1.0000	1205.0	54.01%	1205.8	54.05%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.569e-01	1.0000	391.0	17.53%	391.2	17.54%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-6.569e-01	1.0000	1208.0	54.15%	1208.6	54.17%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.568e-01	1.0000	385.0	17.26%	385.1	17.26%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-6.565e-01	1.0000	2024.0	90.72%	2023.5	90.70%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-6.565e-01	1.0000	1238.0	55.49%	1238.3	55.50%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.558e-01	1.0000	348.0	15.60%	348.8	15.63%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.557e-01	1.0000	343.0	15.37%	343.9	15.42%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.555e-01	1.0000	338.0	15.15%	338.0	15.15%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-6.551e-01	1.0000	1326.0	59.44%	1326.7	59.47%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.551e-01	1.0000	324.0	14.52%	324.0	14.52%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.549e-01	1.0000	1337.0	59.93%	1337.1	59.94%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.540e-01	1.0000	1387.0	62.17%	1387.6	62.20%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.529e-01	1.0000	1441.0	64.59%	1441.9	64.63%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.524e-01	1.0000	1461.0	65.49%	1461.1	65.49%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.522e-01	1.0000	2063.0	92.47%	2062.9	92.47%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.521e-01	1.0000	253.0	11.34%	253.1	11.34%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-6.518e-01	1.0000	247.0	11.07%	247.0	11.07%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.502e-01	1.0000	222.0	9.95%	222.1	9.95%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.498e-01	1.0000	1561.0	69.97%	1561.1	69.97%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.498e-01	1.0000	215.0	9.64%	215.1	9.64%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.493e-01	1.0000	1579.0	70.78%	1579.7	70.81%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-6.490e-01	1.0000	2085.0	93.46%	2085.0	93.45%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.490e-01	1.0000	205.0	9.19%	205.2	9.20%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-6.486e-01	1.0000	1602.0	71.81%	1602.4	71.83%
Tal1	CATCTG	1e0	-6.484e-01	1.0000	1607.0	72.03%	1607.6	72.06%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.481e-01	1.0000	194.0	8.70%	194.1	8.70%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.479e-01	1.0000	1622.0	72.70%	1622.5	72.72%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.471e-01	1.0000	1644.0	73.69%	1644.1	73.69%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.470e-01	1.0000	181.0	8.11%	181.2	8.12%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.466e-01	1.0000	1658.0	74.32%	1658.0	74.32%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.458e-01	1.0000	169.0	7.58%	169.1	7.58%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.455e-01	1.0000	167.0	7.49%	167.2	7.49%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.443e-01	1.0000	2111.0	94.62%	2111.0	94.62%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.429e-01	1.0000	145.0	6.50%	145.1	6.50%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.427e-01	1.0000	144.0	6.45%	144.2	6.46%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.416e-01	1.0000	1770.0	79.34%	1770.3	79.35%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.408e-01	1.0000	131.0	5.87%	131.1	5.88%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.406e-01	1.0000	130.0	5.83%	130.0	5.83%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.403e-01	1.0000	128.0	5.74%	128.0	5.74%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.403e-01	1.0000	1794.0	80.41%	1794.2	80.42%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.400e-01	1.0000	126.0	5.65%	126.0	5.65%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-6.398e-01	1.0000	1802.0	80.77%	1802.2	80.78%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.380e-01	1.0000	115.0	5.15%	115.1	5.16%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.379e-01	1.0000	1833.0	82.16%	1833.2	82.17%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.363e-01	1.0000	872.0	39.09%	873.7	39.16%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.363e-01	1.0000	107.0	4.80%	107.0	4.80%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.362e-01	1.0000	834.0	37.38%	835.9	37.47%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.361e-01	1.0000	792.0	35.50%	793.9	35.58%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.358e-01	1.0000	746.0	33.44%	747.8	33.52%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.357e-01	1.0000	1050.0	47.06%	1051.1	47.11%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.355e-01	1.0000	715.0	32.05%	716.5	32.11%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.355e-01	1.0000	1081.0	48.45%	1082.9	48.54%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.354e-01	1.0000	1087.0	48.72%	1089.0	48.81%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-6.354e-01	1.0000	103.0	4.62%	103.0	4.62%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.349e-01	1.0000	2146.0	96.19%	2145.9	96.19%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.348e-01	1.0000	658.0	29.49%	660.0	29.58%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-6.334e-01	1.0000	95.0	4.26%	95.1	4.26%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.331e-01	1.0000	94.0	4.21%	94.2	4.22%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.325e-01	1.0000	539.0	24.16%	540.3	24.22%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.313e-01	1.0000	1358.0	60.87%	1359.5	60.94%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-6.307e-01	1.0000	1384.0	62.03%	1385.8	62.12%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.304e-01	1.0000	1397.0	62.62%	1399.0	62.71%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.262e-01	1.0000	1535.0	68.80%	1536.5	68.87%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-6.257e-01	1.0000	364.0	16.32%	365.9	16.40%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.251e-01	1.0000	1563.0	70.06%	1564.7	70.14%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-6.250e-01	1.0000	353.0	15.82%	355.0	15.91%
SeqBias: TA-repeat	TATATATATA	1e0	-6.245e-01	1.0000	1978.0	88.66%	1978.5	88.68%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.241e-01	1.0000	68.0	3.05%	68.2	3.06%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-6.236e-01	1.0000	1601.0	71.76%	1602.6	71.83%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.226e-01	1.0000	317.0	14.21%	318.1	14.26%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.223e-01	1.0000	64.0	2.87%	64.1	2.87%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.213e-01	1.0000	301.0	13.49%	302.1	13.54%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.211e-01	1.0000	299.0	13.40%	300.0	13.45%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.190e-01	1.0000	1692.0	75.84%	1693.8	75.92%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-6.138e-01	1.0000	952.0	42.67%	954.3	42.78%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.137e-01	1.0000	917.0	41.10%	919.6	41.22%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.134e-01	1.0000	2186.0	97.98%	2185.9	97.98%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.133e-01	1.0000	840.0	37.65%	842.7	37.77%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-6.127e-01	1.0000	781.0	35.01%	783.8	35.13%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.122e-01	1.0000	742.0	33.26%	744.1	33.35%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.121e-01	1.0000	739.0	33.12%	741.1	33.22%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.114e-01	1.0000	699.0	31.33%	702.0	31.46%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.110e-01	1.0000	677.0	30.35%	679.7	30.47%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-6.110e-01	1.0000	677.0	30.35%	679.8	30.47%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.096e-01	1.0000	1320.0	59.17%	1322.9	59.30%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.094e-01	1.0000	44.0	1.97%	44.0	1.97%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-6.083e-01	1.0000	581.0	26.04%	583.1	26.14%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.076e-01	1.0000	2192.0	98.25%	2191.9	98.25%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.054e-01	1.0000	2194.0	98.34%	2193.9	98.34%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.047e-01	1.0000	1874.0	84.00%	1875.2	84.05%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.991e-01	1.0000	34.0	1.52%	34.2	1.53%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.991e-01	1.0000	2199.0	98.57%	2198.8	98.56%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-5.940e-01	1.0000	341.0	15.28%	343.8	15.41%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-5.928e-01	1.0000	329.0	14.75%	331.4	14.85%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-5.919e-01	1.0000	1006.0	45.09%	1010.0	45.27%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.904e-01	1.0000	120.0	5.38%	122.0	5.47%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-5.888e-01	1.0000	722.0	32.36%	725.1	32.50%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-5.876e-01	1.0000	1323.0	59.30%	1327.0	59.48%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-5.869e-01	1.0000	26.0	1.17%	26.1	1.17%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.837e-01	1.0000	578.0	25.91%	581.8	26.08%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.828e-01	1.0000	558.0	25.01%	561.9	25.19%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.794e-01	1.0000	499.0	22.37%	502.1	22.51%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-5.760e-01	1.0000	451.0	20.22%	454.8	20.39%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.744e-01	1.0000	1882.0	84.36%	1884.9	84.49%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.740e-01	1.0000	427.0	19.14%	430.7	19.30%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-5.735e-01	1.0000	20.0	0.90%	20.0	0.90%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.707e-01	1.0000	1023.0	45.85%	1027.1	46.04%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.705e-01	1.0000	948.0	42.49%	952.2	42.68%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.615e-01	1.0000	1446.0	64.81%	1450.7	65.03%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.596e-01	1.0000	1485.0	66.56%	1489.7	66.77%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.569e-01	1.0000	15.0	0.67%	15.0	0.67%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-5.569e-01	1.0000	15.0	0.67%	15.0	0.67%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.566e-01	1.0000	1810.0	81.13%	1813.6	81.29%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.564e-01	1.0000	285.0	12.77%	288.1	12.92%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-5.513e-01	1.0000	134.0	6.01%	136.0	6.10%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-5.495e-01	1.0000	2218.0	99.42%	2218.0	99.42%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.494e-01	1.0000	249.0	11.16%	252.9	11.33%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.381e-01	1.0000	2186.0	97.98%	2186.1	97.99%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-5.276e-01	1.0000	1236.0	55.40%	1242.7	55.70%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-5.256e-01	1.0000	2193.0	98.30%	2194.0	98.34%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.253e-01	1.0000	770.0	34.51%	776.1	34.79%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.230e-01	1.0000	715.0	32.05%	721.9	32.36%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-5.221e-01	1.0000	9.0	0.40%	9.0	0.40%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.180e-01	1.0000	1723.0	77.23%	1728.7	77.48%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.122e-01	1.0000	138.0	6.19%	141.1	6.32%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.122e-01	1.0000	138.0	6.19%	141.1	6.32%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-5.032e-01	1.0000	2224.0	99.69%	2224.0	99.69%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-5.021e-01	1.0000	7.0	0.31%	7.0	0.31%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.963e-01	1.0000	1972.0	88.39%	1976.7	88.60%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-4.914e-01	1.0000	2128.0	95.38%	2131.0	95.52%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.906e-01	1.0000	957.0	42.90%	965.1	43.26%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-3.776e-01	1.0000	2222.0	99.60%	2222.0	99.60%
SeqBias: CA-repeat	CACACACACA	1e0	-3.748e-01	1.0000	2229.0	99.91%	2229.0	99.91%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-3.517e-01	1.0000	27.0	1.21%	31.0	1.39%
SeqBias: CG bias	SSSSSSSSSS	1e0	-2.569e-01	1.0000	2227.0	99.82%	2227.0	99.82%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	0.000e+00	1.0000	2231.0	100.00%	2231.0	100.00%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	0.000e+00	1.0000	2231.0	100.00%	2231.0	100.00%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	0.000e+00	1.0000	2231.0	100.00%	2231.0	100.00%
SeqBias: G/A bias	RRRRRRRRRR	1e0	0.000e+00	1.0000	2231.0	100.00%	2231.0	100.00%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	0.000e+00	1.0000	2231.0	100.00%	2231.0	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	2231.0	100.00%	2231.0	100.00%