Information for 5-GCACACACGA (Motif 9)


Reverse Opposite:

p-value:1e-1
log p-value:-2.411e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.31%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets1267.6 +/- 536.8bp
Average Position of motif in Background1237.0 +/- 468.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----GCACACACGA--
AGCGGCACACACGCAA

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GCACACACGA--
CGAAGCACACAAAATA

PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GCACACACGA
GCAAACAM--

MA0538.1_DAF-12/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GCACACACGA--
NACGCACACACACAC

twi/dmmpmm(SeSiMCMC)/fly

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCACACACGA
CAACACATG-

twi/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCACACACGA
-AACACATG-

SeqBias: CA-repeat

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCACACACGA-
-CACACACACA

PB0026.1_Gm397_1/Jaspar

Match Rank:8
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------GCACACACGA
CAGATGTGCACATACGT

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------GCACACACGA
TACATGTGCACATAAAA

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.62
Offset:-8
Orientation:forward strand
Alignment:--------GCACACACGA
NNNVCTGWGYAAACASN-