Information for 5-TTGGTGCCTGGG (Motif 6)


Reverse Opposite:

p-value:1e-1
log p-value:-2.620e+00
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets1224.6 +/- 395.3bp
Average Position of motif in Background1343.9 +/- 225.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PHD1(MacIsaac)/Yeast

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:TTGGTGCCTGGG
---GTGCCT---

SOK2(MacIsaac)/Yeast

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTGGTGCCTGGG
---TTGCCTGC-

RAP1(MacIsaac)/Yeast

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTGGTGCCTGGG---
---GTGTATGGGTGT

MA0340.1_MOT3/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TTGGTGCCTGGG
----TACCTN--

MOT3/Literature(Harbison)/Yeast

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TTGGTGCCTGGG
----TACCTN--

MOT3(MacIsaac)/Yeast

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TTGGTGCCTGGG
----TACCTN--

MA0313.1_HAP2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTGGTGCCTGGG
TTGGT-------

MA0510.1_RFX5/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTGGTGCCTGGG--
NCTGTTGCCAGGGAG

CRZ1(MacIsaac)/Yeast

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TTGGTGCCTGGG
---GAGGCTG--

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTGGTGCCTGGG----
NNTNNTGTCTGGNNTNG