Information for 4-GAGGCGAGGCGA (Motif 5)


Reverse Opposite:

p-value:1e-1
log p-value:-2.773e+00
Information Content per bp:1.950
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets1193.8 +/- 370.4bp
Average Position of motif in Background592.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sp1(Zf)/Promoter/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCGAGGCGA
GGGGGCGGGGCC-

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGGCGAGGCGA-
CAAAGGCGTGGCCAG

MA0516.1_SP2/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGCGAGGCGA
GGGNGGGGGCGGGGC--

PB0110.1_Bcl6b_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAGGCGAGGCGA-
NNTNAGGGGCGGNNNN

MA0079.3_SP1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCGAGGCGA
GGGGGCGGGGC--

SUT1?/SacCer-Promoters/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GAGGCGAGGCGA
---GCGCGGGG-

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGGCGAGGCGA
DGGGYGKGGC--

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GAGGCGAGGCGA-
NAGANTGGCGGGGNGNA

MA0599.1_KLF5/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGGCGAGGCGA
GGGGNGGGGC--

POL003.1_GC-box/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGGCGAGGCGA
AGGGGGCGGGGCTG