Information for 1-AGGGAGCTTG (Motif 4)


Reverse Opposite:

p-value:1e-1
log p-value:-3.246e+00
Information Content per bp:1.530
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets1097.1 +/- 614.1bp
Average Position of motif in Background1131.1 +/- 592.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGGGAGCTTG
-CGGAGC---

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AGGGAGCTTG
---AAGCTTG

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AGGGAGCTTG-
NNNTTAGGTAGCNTNT

GCR2(MacIsaac)/Yeast

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGGAGCTTG
NGGAAGC---

MA0592.1_ESRRA/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGGAGCTTG-
NGTGACCTTGG

SFL1(MacIsaac)/Yeast

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGGGAGCTTG
--GAAGCTTC

AFT2/AFT2_H2O2Lo/10-RCS1[~AFT2](Harbison)/Yeast

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGGAGCTTG
-GGGTGC---

Tag/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGGAGCTTG
CAGGTAG----

MA0305.1_GCR2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGGGAGCTTG
NGGAAGC---

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGGGAGCTTG---
NNNAAGGGGGCGGGNNN