Information for 5-GCCGGTGA (Motif 13)


Reverse Opposite:

p-value:1e0
log p-value:-1.272e+00
Information Content per bp:1.530
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif3.50%
Number of Background Sequences with motif71.0
Percentage of Background Sequences with motif3.18%
Average Position of motif in Targets852.6 +/- 546.2bp
Average Position of motif in Background861.7 +/- 551.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0344.1_NHP10/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GCCGGTGA
GCCGGGGA

YDR520C(MacIsaac)/Yeast

Match Rank:2
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GCCGGTGA
TCCGCCGGAGA

PL0011.1_hlh-2::hlh-4/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GCCGGTGA----
NNNNAGCAGGTGNTATT

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCCGGTGA-
NNCAGGTGNN

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GCCGGTGA
NGGGGCGGTG-

MA0086.1_sna/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCCGGTGA
-CAGGTG-

Run/dmmpmm(Papatsenko)/fly

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCCGGTGA
GGCGGTG-

MA0103.2_ZEB1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCCGGTGA--
-CAGGTGAGG

MA0427.1_YJL103C/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCCGGTGA
AGCTCCGGAGA

ACE2/ACE2_YPD/2-SWI5(Harbison)/Yeast

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCCGGTGA
TGCTGGT--