Information for 1-NNAGTTTGGTNN (Motif 1)


Reverse Opposite:

p-value:1e-2
log p-value:-5.550e+00
Information Content per bp:1.399
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets847.4 +/- 507.8bp
Average Position of motif in Background1670.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0313.1_HAP2/Jaspar

Match Rank:1
Score:0.73
Offset:5
Orientation:forward strand
Alignment:NNAGTTTGGTNN
-----TTGGT--

GTS1(MacIsaac)/Yeast

Match Rank:2
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:NNAGTTTGGTNN
-----TTGGTA-

pan/dmmpmm(SeSiMCMC)/fly

Match Rank:3
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:NNAGTTTGGTNN
----TTTGATN-

PB0037.1_Isgf3g_1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:NNAGTTTGGTNN---
TNAGTTTCGATTTTN

pan/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:NNAGTTTGGTNN
----TTTGAT--

pan/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:NNAGTTTGGTNN
---CTTTGAT--

MET31(MacIsaac)/Yeast

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:NNAGTTTGGTNN
--GGTGTGGC--

pan/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:NNAGTTTGGTNN
---CTTTGATC-

PB0035.1_Irf5_1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:NNAGTTTGGTNN---
NTGGTTTCGGTTNNN

prd/dmmpmm(Down)/fly

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:NNAGTTTGGTNN
-CAGTTT-----