Information for 9-CGCCTCCCAC (Motif 9)


Reverse Opposite:

p-value:1e-14
log p-value:-3.434e+01
Information Content per bp:1.732
Number of Target Sequences with motif880.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif580.1
Percentage of Background Sequences with motif1.28%
Average Position of motif in Targets13.1 +/- 4.9bp
Average Position of motif in Background13.0 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EGR1/MA0162.2/Jaspar

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CGCCTCCCAC---
CCCCCGCCCCCGCC

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:2
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:CGCCTCCCAC---
-YCCGCCCACGCN

SP1/MA0079.3/Jaspar

Match Rank:3
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CGCCTCCCAC
GCCCCGCCCCC

btd/MA0443.1/Jaspar

Match Rank:4
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CGCCTCCCAC-
-TCCGCCCCCT

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:5
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CGCCTCCCAC
CACCGCCCCC

btd/dmmpmm(Noyes)/fly

Match Rank:6
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CGCCTCCCAC
ATCCGCCCCC

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CGCCTCCCAC-
GCCMCGCCCMCY

PB0010.1_Egr1_1/Jaspar

Match Rank:8
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CGCCTCCCAC-----
-TCCGCCCCCGCATT

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CGCCTCCCAC-
NAGCCCCGCCCCCN

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CGCCTCCCAC---
---CRCCCACGCA