Information for 5-ATTTGCATAW (Motif 7)


Reverse Opposite:

p-value:1e-29
log p-value:-6.767e+01
Information Content per bp:1.697
Number of Target Sequences with motif317.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif93.3
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets13.4 +/- 4.1bp
Average Position of motif in Background14.8 +/- 5.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:ATTTGCATAW
ATTTGCATAA

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATAW
ATTTGCATAT

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.97
Offset:-3
Orientation:forward strand
Alignment:---ATTTGCATAW
TTCATTTGCATAT

POU5F1B/MA0792.1/Jaspar

Match Rank:4
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATAW
ATTTGCATA-

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.94
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATAW--
TNTAATTTGCATANNN

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATAW
ATTTGCATA-

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.94
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATAW--
TNTAATTTGCATACNA

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.94
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATAW--
TNTAATTTGCATACNA

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-ATTTGCATAW-
AATTTGCATANT

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---ATTTGCATAW
BTVATTWGCATA-