Information for 3-GGGGATTTCC (Motif 5)


Reverse Opposite:

p-value:1e-30
log p-value:-7.083e+01
Information Content per bp:1.718
Number of Target Sequences with motif590.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif257.4
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets13.2 +/- 4.5bp
Average Position of motif in Background13.2 +/- 5.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCC
GGGGATTTCC

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GGGGATTTCC-
NGGGGATTTCCC

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCC
GGGAATTTCC

dl(var.2)/MA0023.1/Jaspar

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCC
GGGGATTTCC

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCC
GGGGATTTCC

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GGGGATTTCC
GGGAATTTCC

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-GGGGATTTCC--
AGGGGAATCCCCT

dif/Rel/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCC-
GGGGAATCCCC

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:9
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GGGGATTTCC--
GGGGATTCCCCC

dl/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCC
GGGATTTCCC